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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1uwvA_

Fold library idPDB HeaderMoleculeTitle
c1uwvA_PDB header: transferaseChain: A: PDB Molecule: 23s rrna (uracil-5-)-methyltransferase ruma;PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase


Added to library: Tue Mar 16 13:20:08 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHF
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Known secondary structure (DSSP)


TTSTTT

TT

SS



TTB


S
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GVCGGCQQQHASVDLQQRSKSAALARLXKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQXGFRKAGSS
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Known secondary structure (DSSP) TTBTT
S
TTB
TS





SSS
BSTTTTBTTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence DIVDVKQCPILAPQLEALLPKVRACLGSLQAXRHLGHVELVQATSGTLXILRHTAPLSSADREKLERFSH
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Known secondary structure (DSSP)

S

TTB
TT
GGGGGTTSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence SEGLDLYLAPDSEILETVSGEXPWYDSNGLRLTFSPRDFIQVNAGVNQKXVARALEWLDVQPEDRVLDLF
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Known secondary structure (DSSP) T
SSSS





TT

SSS


SBT

TT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence CGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP
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Known secondary structure (DSSP)
TTTTTTTSSS
TT

S

TTS

SSSGGGTT

S

 .........360.........370.........380.........390.........400.........410.......
Sequence ARAGAAGVXQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAXLDXFPHTGHLESXVLFSR
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Known secondary structure (DSSP)
TT



SS
TT


STTSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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