Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A9E9
DateThu Jan 5 11:10:01 GMT 2012
Unique Job IDf65eb8d9a8af4613

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2bgcA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:prfa;
PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes
Confidence and coverage
Confidence:100.0% Coverage: 94%
205 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSESAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLYATLANGRVSL
Secondary structure 

























SS confidence 



























































Disorder  ???????







?
?









































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   .........70.........80.........90.........100.........110.........120
Sequence  IDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKHYRPLLLNDTLFLRKLCVTLS
Secondary structure 












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   .........130.........140.........150.........160.........170.........180
Sequence  HKNYRNIVSLTQNQSFPLVNRLAAFILLSQEGDLYHEKHTQAAEYLGVSYRHLLYVLAQF
Secondary structure 













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Disorder 













???












???

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   .........190.........200.........210.........
Sequence  IHDGLLIKSKKGYLIKNRKQLSGLALEMDPENKFSGMMQ
Secondary structure 
















SS confidence 






































Disorder 

























?????????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2bgc chain A

3D model

Region: 3 - 210
Aligned: 205
Modelled: 205
Confidence: 100.0%
Identity: 12%
PDB header:transcription
Chain: A: PDB Molecule:prfa;
PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes

Phyre2

PDB 3dv8 chain A

3D model

Region: 4 - 206
Aligned: 203
Modelled: 203
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the2 crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at3 2.55 a resolution

Phyre2

PDB 3fx3 chain A

3D model

Region: 4 - 206
Aligned: 202
Modelled: 203
Confidence: 100.0%
Identity: 13%
PDB header:camp-binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: structure of a putative camp-binding regulatory protein from2 silicibacter pomeroyi dss-3

Phyre2

PDB 1zyb chain A

3D model

Region: 4 - 201
Aligned: 198
Modelled: 198
Confidence: 100.0%
Identity: 16%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator, crp family;
PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution

Phyre2

PDB 3e6d chain A

3D model

Region: 4 - 205
Aligned: 199
Modelled: 199
Confidence: 100.0%
Identity: 16%
PDB header:transcription regulation
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: crystal structure of cprk c200s

Phyre2

PDB 3iwz chain B

3D model

Region: 6 - 195
Aligned: 190
Modelled: 190
Confidence: 100.0%
Identity: 18%
PDB header:transcription
Chain: B: PDB Molecule:catabolite activation-like protein;
PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris

Phyre2

PDB 3d0s chain A

3D model

Region: 4 - 206
Aligned: 203
Modelled: 203
Confidence: 100.0%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: camp receptor protein from m.tuberculosis, camp-free form

Phyre2

PDB 3la2 chain A

3D model

Region: 20 - 201
Aligned: 182
Modelled: 182
Confidence: 100.0%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:global nitrogen regulator;
PDBTitle: crystal structure of ntca in complex with 2-oxoglutarate

Phyre2

PDB 3e97 chain A

3D model

Region: 4 - 205
Aligned: 200
Modelled: 202
Confidence: 100.0%
Identity: 15%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator of crp/fnr2 family (yp_604437.1) from deinococcus geothermalis dsm3 11300 at 1.86 a resolution

Phyre2

PDB 3kcc chain A

3D model

Region: 8 - 195
Aligned: 188
Modelled: 188
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:catabolite gene activator;
PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein

Phyre2

PDB 1zre chain B

3D model

Region: 8 - 195
Aligned: 188
Modelled: 188
Confidence: 100.0%
Identity: 15%
PDB header:gene regulation/dna
Chain: B: PDB Molecule:catabolite gene activator;
PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna

Phyre2

PDB 2zdb chain A

3D model

Region: 20 - 205
Aligned: 185
Modelled: 186
Confidence: 100.0%
Identity: 16%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of tthb099, a transcriptional regulator crp family2 from thermus thermophilus hb8

Phyre2

PDB 2zcw chain A

3D model

Region: 19 - 206
Aligned: 187
Modelled: 188
Confidence: 100.0%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, fnr/crp family;
PDBTitle: crystal structure of ttha1359, a transcriptional regulator,2 crp/fnr family from thermus thermophilus hb8

Phyre2

PDB 3dkw chain B

3D model

Region: 4 - 204
Aligned: 201
Modelled: 201
Confidence: 100.0%
Identity: 14%
PDB header:transcription regulator
Chain: B: PDB Molecule:dnr protein;
PDBTitle: crystal structure of dnr from pseudomonas aeruginosa.

Phyre2

PDB 2oz6 chain A

3D model

Region: 6 - 197
Aligned: 191
Modelled: 192
Confidence: 100.0%
Identity: 19%
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence factor regulator;
PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp

Phyre2

PDB 1ft9 chain A

3D model

Region: 5 - 205
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:carbon monoxide oxidation system transcription
PDBTitle: structure of the reduced (feii) co-sensing protein from r.2 rubrum

Phyre2

PDB 2gau chain A

3D model

Region: 4 - 206
Aligned: 198
Modelled: 198
Confidence: 100.0%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator, crp/fnr family from2 porphyromonas gingivalis (apc80792), structural genomics, mcsg

Phyre2

PDB 2fmy chain B

3D model

Region: 4 - 206
Aligned: 195
Modelled: 203
Confidence: 100.0%
Identity: 16%
PDB header:dna binding protein
Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator
PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form)

Phyre2

PDB 1o5l chain A domain 1

3D model

Region: 10 - 136
Aligned: 127
Modelled: 127
Confidence: 99.8%
Identity: 17%
Fold: Double-stranded beta-helix
Superfamily: cAMP-binding domain-like
Family: cAMP-binding domain

Phyre2

PDB 1o5l chain A

3D model

Region: 10 - 136
Aligned: 127
Modelled: 127
Confidence: 99.8%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of transcriptional regulator (tm1171) from2 thermotoga maritima at 2.30 a resolution

Phyre2
1

c2bgcA_
2

c3dv8A_
3

c3fx3A_
4

c1zybA_
5

c3e6dA_
6

c3iwzB_
7

c3d0sA_
8

c3la2A_
9

c3e97A_
10

c3kccA_
11

c1zreB_
12

c2zdbA_
13

c2zcwA_
14

c3dkwB_
15

c2oz6A_
16

c1ft9A_
17

c2gauA_
18

c2fmyB_
19

d1o5la1
20

c1o5lA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2bgcA_



100.0 12 PDB header:transcription
Chain: A: PDB Molecule:prfa;
PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes
2c3dv8A_



100.0 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the2 crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at3 2.55 a resolution
3c3fx3A_



100.0 13 PDB header:camp-binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: structure of a putative camp-binding regulatory protein from2 silicibacter pomeroyi dss-3
4c1zybA_



100.0 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator, crp family;
PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution
5c3e6dA_



100.0 16 PDB header:transcription regulation
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: crystal structure of cprk c200s
6c3iwzB_



100.0 18 PDB header:transcription
Chain: B: PDB Molecule:catabolite activation-like protein;
PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris
7c3d0sA_



100.0 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: camp receptor protein from m.tuberculosis, camp-free form
8c3la2A_



100.0 17 PDB header:transcription
Chain: A: PDB Molecule:global nitrogen regulator;
PDBTitle: crystal structure of ntca in complex with 2-oxoglutarate
9c3e97A_



100.0 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator of crp/fnr2 family (yp_604437.1) from deinococcus geothermalis dsm3 11300 at 1.86 a resolution
10c3kccA_



100.0 16 PDB header:transcription
Chain: A: PDB Molecule:catabolite gene activator;
PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein
11c1zreB_



100.0 15 PDB header:gene regulation/dna
Chain: B: PDB Molecule:catabolite gene activator;
PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna
12c2zdbA_



100.0 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of tthb099, a transcriptional regulator crp family2 from thermus thermophilus hb8
13c2zcwA_



100.0 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, fnr/crp family;
PDBTitle: crystal structure of ttha1359, a transcriptional regulator,2 crp/fnr family from thermus thermophilus hb8
14c3dkwB_



100.0 14 PDB header:transcription regulator
Chain: B: PDB Molecule:dnr protein;
PDBTitle: crystal structure of dnr from pseudomonas aeruginosa.
15c2oz6A_



100.0 19 PDB header:dna binding protein
Chain: A: PDB Molecule:virulence factor regulator;
PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp
16c1ft9A_



100.0 16 PDB header:transcription
Chain: A: PDB Molecule:carbon monoxide oxidation system transcription
PDBTitle: structure of the reduced (feii) co-sensing protein from r.2 rubrum
17c2gauA_



100.0 18 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator, crp/fnr family from2 porphyromonas gingivalis (apc80792), structural genomics, mcsg
18c2fmyB_



100.0 16 PDB header:dna binding protein
Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator
PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form)
19d1o5la1



99.8 17 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
20c1o5lA_



99.8 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of transcriptional regulator (tm1171) from2 thermotoga maritima at 2.30 a resolution
21d3e5ua2



not modelled 99.8 13 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
22d1zyba2



not modelled 99.8 14 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
23c3gydA_



not modelled 99.8 15 PDB header:dna binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding domain;
PDBTitle: crystal structure of a cyclic nucleotide-binding domain (mfla_1926)2 from methylobacillus flagellatus kt at 1.79 a resolution
24d2h6ca2



not modelled 99.8 13 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
25c2pqqD_



not modelled 99.8 21 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of the n-terminal domain of2 a transcriptional regulator from streptomyces coelicolor a3(2)
26d1i5za2



not modelled 99.8 14 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
27d2oz6a2



not modelled 99.8 19 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
28c3dn7A_



not modelled 99.8 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cyclic nucleotide binding regulatory protein;
PDBTitle: cyclic nucleotide binding regulatory protein from cytophaga2 hutchinsonii.
29d2gaua2



not modelled 99.7 20 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
30d1ft9a2



not modelled 99.7 11 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:CO-sensing protein CooA, N-terminal domain
31d2coha2



not modelled 99.6 20 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
32c3mdpA_



not modelled 99.6 16 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding domain (cnmp-bd) protein;
PDBTitle: crystal structure of a putative cyclic nucleotide-binding protein2 (gmet_1532) from geobacter metallireducens gs-15 at 1.90 a resolution
33d1cx4a2



not modelled 99.6 14 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
34d1cx4a1



not modelled 99.6 13 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
35c2z69A_



not modelled 99.6 18 PDB header:transcription regulator
Chain: A: PDB Molecule:dnr protein;
PDBTitle: crystal structure of the sensor domain of the transcriptional2 regulator dnr from pseudomonas aeruginosa
36d1ne6a2



not modelled 99.6 15 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
37d1vp6a_



not modelled 99.5 17 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
38c2ptmA_



not modelled 99.5 18 PDB header:transport protein
Chain: A: PDB Molecule:hyperpolarization-activated (ih) channel;
PDBTitle: structure and rearrangements in the carboxy-terminal region of spih2 channels
39c3otfA_



not modelled 99.5 19 PDB header:transport protein
Chain: A: PDB Molecule:potassium/sodium hyperpolarization-activated cyclic
PDBTitle: structural basis for the camp-dependent gating in human hcn4 channel
40c3idcB_



not modelled 99.5 11 PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase type ii-beta
PDBTitle: crystal structure of (102-265)riib:c holoenzyme of camp-2 dependent protein kinase
41d1ne6a1



not modelled 99.5 21 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
42c3uknC_



not modelled 99.5 14 PDB header:transport protein, membrane protein
Chain: C: PDB Molecule:novel protein similar to vertebrate potassium voltage-gated
PDBTitle: structure of the c-linker/cnbhd of zelk channels in c 2 2 21 space2 group
43d1q3ea_



not modelled 99.5 18 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
44d1o7fa2



not modelled 99.4 11 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
45d1wgpa_



not modelled 99.4 18 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
46c3pvbB_



not modelled 99.4 21 PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase type i-alpha regulatory
PDBTitle: crystal structure of (73-244)ria:c holoenzyme of camp-dependent2 protein kinase
47c2byvE_



not modelled 99.4 10 PDB header:regulation
Chain: E: PDB Molecule:rap guanine nucleotide exchange factor 4;
PDBTitle: structure of the camp responsive exchange factor epac2 in2 its auto-inhibited state
48d2coha1



not modelled 99.4 24 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
49c3ogjD_



not modelled 99.4 10 PDB header:transferase
Chain: D: PDB Molecule:prkg1 protein;
PDBTitle: crystal structure of partial apo (92-227) of cgmp-dependent protein2 kinase
50c1o7fA_



not modelled 99.4 10 PDB header:regulation
Chain: A: PDB Molecule:camp-dependent rap1 guanine-nucleotide exchange
PDBTitle: crystal structure of the regulatory domain of epac2
51d2gaua1



not modelled 99.4 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
52d2bgca1



not modelled 99.3 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
53c3shrA_



not modelled 99.3 14 PDB header:transferase
Chain: A: PDB Molecule:cgmp-dependent protein kinase 1;
PDBTitle: crystal structure of cgmp-dependent protein kinase reveals novel site2 of interchain communication
54d1ft9a1



not modelled 99.3 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
55d1o7fa3



not modelled 99.3 9 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
56d2h6ca1



not modelled 99.3 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
57c3of1A_



not modelled 99.3 15 PDB header:transferase
Chain: A: PDB Molecule:camp-dependent protein kinase regulatory subunit;
PDBTitle: crystal structure of bcy1, the yeast regulatory subunit of pka
58c1cx4A_



not modelled 99.2 16 PDB header:signaling protein
Chain: A: PDB Molecule:camp-dependent protein kinase regulatory subunit
PDBTitle: crystal structure of a deletion mutant of the type ii beta2 regulatory subunit of camp-dependent protein kinase
59d3e5ua1



not modelled 99.2 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
60d2oz6a1



not modelled 99.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
61c1rgsA_



not modelled 99.1 17 PDB header:kinase
Chain: A: PDB Molecule:camp dependent protein kinase;
PDBTitle: regulatory subunit of camp dependent protein kinase
62c3cf6E_



not modelled 99.1 10 PDB header:signaling protein/gtp-binding protein
Chain: E: PDB Molecule:rap guanine nucleotide exchange factor (gef) 4;
PDBTitle: structure of epac2 in complex with cyclic-amp and rap
63d1i5za1



not modelled 99.1 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
64c2d93A_



not modelled 99.0 12 PDB header:signaling protein
Chain: A: PDB Molecule:rap guanine nucleotide exchange factor 6;
PDBTitle: solution structure of the cnmp_binding domain of human rap2 guanine nucleotide exchange factor 6
65d1zyba1



not modelled 98.4 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
66d3broa1



not modelled 97.3 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
67d2fxaa1



not modelled 97.2 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
68d2bgca2



not modelled 97.2 11 Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:Listeriolysin regulatory protein PrfA, N-terminal domain
69c2x4hA_



not modelled 97.2 20 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
70c2pexA_



not modelled 97.2 11 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
71d2hr3a1



not modelled 97.1 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
72d2fbha1



not modelled 97.1 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
73c2v79B_



not modelled 97.1 19 PDB header:dna-binding protein
Chain: B: PDB Molecule:dna replication protein dnad;
PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis
74d1sfxa_



not modelled 97.1 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
75c3kp3B_



not modelled 97.1 16 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
76c3ecoB_



not modelled 97.1 10 PDB header:transcription
Chain: B: PDB Molecule:mepr;
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
77c2qwwB_



not modelled 97.1 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
78c1f5tA_



not modelled 97.0 15 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
79c3s2wB_



not modelled 97.0 12 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
80d1hw1a1



not modelled 97.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
81c2h09A_



not modelled 97.0 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
82c3eetA_



not modelled 97.0 20 PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
83c3k0lA_



not modelled 97.0 7 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
84c2fxaB_



not modelled 97.0 8 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
85d3deua1



not modelled 96.9 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
86c3r0aB_



not modelled 96.9 6 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
87c2it0A_



not modelled 96.9 18 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
88d1lnwa_



not modelled 96.9 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
89c2du9A_



not modelled 96.9 17 PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
90c1g3wA_



not modelled 96.9 16 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
91d1ku9a_



not modelled 96.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
92c3neuA_



not modelled 96.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262
93c2w48D_



not modelled 96.8 18 PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
94c3g3zA_



not modelled 96.8 9 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
95c2rdpA_



not modelled 96.8 13 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
96c3hruA_



not modelled 96.8 20 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
97d2d1ha1



not modelled 96.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
98c1fx7C_



not modelled 96.8 16 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
99c3bj6B_



not modelled 96.8 10 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
100d1u2wa1



not modelled 96.8 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
101c3deuB_



not modelled 96.8 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
102c3f8mA_



not modelled 96.8 14 PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis
103c3boqB_



not modelled 96.8 11 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
104c3nrvC_



not modelled 96.8 9 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
105c3edpB_



not modelled 96.7 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin2111 protein;
PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262
106c3ctaA_



not modelled 96.7 15 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
107c3by6C_



not modelled 96.7 11 PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
108d1s3ja_



not modelled 96.7 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
109c3nqoB_



not modelled 96.7 15 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
110d1lj9a_



not modelled 96.7 8 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
111c3bjaA_



not modelled 96.6 10 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
112d1j5ya1



not modelled 96.6 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
113c2gxgA_



not modelled 96.6 9 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
114c2nnnB_



not modelled 96.6 11 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
115d2frha1



not modelled 96.6 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
116d1p4xa2



not modelled 96.6 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
117c3fm5D_



not modelled 96.5 10 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
118d2etha1



not modelled 96.5 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
119d2isya1



not modelled 96.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
120d3ctaa1



not modelled 96.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0