Email l.a.kelley@imperial.ac.uk Description P28905 Date Thu Jan 5 11:45:19 GMT 2012 Unique Job ID e89ec7e33ff802e3

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1em8a_ 100.0 100 Fold:DNA polymerase III chi subunit Superfamily:DNA polymerase III chi subunit Family:DNA polymerase III chi subunit 2 d1c4oa2 80.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 3 c2j17A_ 80.2 7 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase yil113w; PDBTitle: ptyr bound form of sdp-1 4 c2imgA_ 78.7 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 23; PDBTitle: crystal structure of dual specificity protein phosphatase2 23 from homo sapiens in complex with ligand malate ion 5 d1tf5a4 78.1 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 6 d1t5la2 77.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 7 d1fuka_ 76.2 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 8 d1nkta4 69.0 25 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 9 c3rgqA_ 67.5 15 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine phosphatase mitochondrial 1; PDBTitle: crystal structure of ptpmt1 in complex with pi(5)p 10 c3hgtA_ 62.2 13 PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex 11 c1fpzF_ 62.0 10 PDB header:hydrolase Chain: F: PDB Molecule:cyclin-dependent kinase inhibitor 3; PDBTitle: crystal structure analysis of kinase associated phosphatase2 (kap) with a substitution of the catalytic site cysteine3 (cys140) to a serine 12 c2p4dA_ 61.3 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors 13 c1nl3B_ 61.0 25 PDB header:protein transport Chain: B: PDB Molecule:preprotein translocase seca 1 subunit; PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form 14 c2esbA_ 57.1 15 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 18; PDBTitle: crystal structure of human dusp18 15 d1fpza_ 56.5 10 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 16 d1t5ia_ 53.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 17 c1yz4A_ 52.6 10 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 18 c3dl8B_ 49.5 20 PDB header:protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca 19 d1gm5a4 49.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 20 c1tf2A_ 49.1 20 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 21 d2eyqa2 not modelled 48.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 22 c2vdaA_ not modelled 45.9 19 PDB header:protein transport Chain: A: PDB Molecule:translocase subunit seca; PDBTitle: solution structure of the seca-signal peptide complex 23 c2vbcA_ not modelled 45.4 26 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 24 c2hcmA_ not modelled 45.4 16 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium 25 c2hk8B_ not modelled 44.5 18 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution 26 d1oywa3 not modelled 44.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 27 c1wrmA_ not modelled 41.8 15 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 22; PDBTitle: crystal structure of jsp-1 28 c3juxA_ not modelled 41.7 17 PDB header:protein transport Chain: A: PDB Molecule:protein translocase subunit seca; PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima 29 c2oudA_ not modelled 41.4 24 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 30 c3dinB_ not modelled 36.5 18 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 31 d1jr6a_ not modelled 35.6 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 32 c2jmkA_ not modelled 35.4 19 PDB header:protein binding Chain: A: PDB Molecule:hypothetical protein ta0956; PDBTitle: solution structure of ta0956 33 c1zzwA_ not modelled 34.7 23 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 34 c1p74B_ not modelled 34.6 11 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae 35 c3dmdA_ not modelled 34.6 22 PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus 36 c3i32A_ not modelled 34.5 14 PDB header:rna binding protein,hydrolase Chain: A: PDB Molecule:heat resistant rna dependent atpase; PDBTitle: dimeric structure of a hera helicase fragment including the c-terminal2 reca domain, the dimerization domain, and the rna binding domain 37 c1ii0A_ not modelled 33.9 25 PDB header:hydrolase Chain: A: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase 38 d1ihua1 not modelled 33.5 28 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 39 c2wv9A_ not modelled 32.9 18 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus 40 c2wgpA_ not modelled 32.8 9 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 14; PDBTitle: crystal structure of human dual specificity phosphatase 14 41 c2eyqA_ not modelled 32.7 13 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor 42 c2qeqA_ not modelled 31.6 20 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase 43 d1m3ga_ not modelled 30.8 22 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 44 c3emuA_ not modelled 30.0 11 PDB header:hydrolase Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica 45 d1t5la1 not modelled 29.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 46 d1mkpa_ not modelled 29.1 14 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 47 c2nt2C_ not modelled 28.5 13 PDB header:hydrolase Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2; PDBTitle: crystal structure of slingshot phosphatase 2 48 c3nmeA_ not modelled 27.6 12 PDB header:hydrolase Chain: A: PDB Molecule:sex4 glucan phosphatase; PDBTitle: structure of a plant phosphatase 49 c2fsgA_ not modelled 26.5 21 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 50 d1xo1a2 not modelled 25.6 10 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 51 c2g6zB_ not modelled 25.3 18 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 5; PDBTitle: crystal structure of human dusp5 52 c3d4oA_ not modelled 24.5 11 PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution 53 c3e59A_ not modelled 24.2 11 PDB header:transferase Chain: A: PDB Molecule:pyoverdine biosynthesis protein pvca; PDBTitle: crystal structure of the pvca (pa2254) protein from pseudomonas2 aeruginosa 54 d2eyqa5 not modelled 24.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 55 c2j37W_ not modelled 22.7 22 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 56 d1tfra2 not modelled 22.4 15 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 57 c1gl9B_ not modelled 21.5 13 PDB header:topoisomerase Chain: B: PDB Molecule:reverse gyrase; PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp 58 c2iy3A_ not modelled 20.4 16 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 59 d1fx0a3 not modelled 20.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 60 d2g2ja1 not modelled 20.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 61 c2r0bA_ not modelled 19.6 17 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein 62 c3dm5A_ not modelled 19.0 19 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 63 c1rrzA_ not modelled 18.9 16 PDB header:structural genomics,biosynthetic protein Chain: A: PDB Molecule:glycogen synthesis protein glgs; PDBTitle: solution structure of glgs protein from e. coli 64 d1rrza_ not modelled 18.9 16 Fold:Spectrin repeat-like Superfamily:Glycogen synthesis protein GlgS Family:Glycogen synthesis protein GlgS 65 d2jdia3 not modelled 18.1 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 66 c2z83A_ not modelled 17.6 18 PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 67 d1z5za1 not modelled 17.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 68 d2p6ra4 not modelled 17.1 19 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 69 c2cnwF_ not modelled 17.0 16 PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy 70 d1cmwa2 not modelled 16.5 16 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 71 d1j8yf2 not modelled 16.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 72 c1gm5A_ not modelled 15.6 14 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 73 d2j0sa2 not modelled 14.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 74 d2a90a1 not modelled 14.9 5 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 75 c2x0dA_ not modelled 14.7 7 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 76 d1pjca1 not modelled 14.7 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 77 d1z3ix1 not modelled 13.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 78 c1zu4A_ not modelled 13.6 25 PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212 79 c1vmaA_ not modelled 13.5 22 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution 80 c2ihnA_ not modelled 13.5 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:ribonuclease h; PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate 81 c2pqmA_ not modelled 13.5 18 PDB header:lyase Chain: A: PDB Molecule:cysteine synthase; PDBTitle: crystal structure of cysteine synthase (oass) from entamoeba2 histolytica at 1.86 a resolution 82 c2j7pA_ not modelled 13.4 16 PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy 83 d1hv8a2 not modelled 13.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 84 c3ia7A_ not modelled 13.0 14 PDB header:transferase Chain: A: PDB Molecule:calg4; PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase 85 c2hjvB_ not modelled 12.7 14 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase dbpa; PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein 86 c2ipcB_ not modelled 12.3 25 PDB header:transport protein Chain: B: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer 87 c1j8yF_ not modelled 12.1 16 PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant 88 d1b74a1 not modelled 12.0 16 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 89 c2v6jA_ not modelled 11.9 24 PDB header:hydrolase Chain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr 90 d1skyb3 not modelled 11.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 91 d2b2na1 not modelled 11.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 92 d2pd4a1 not modelled 11.6 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 93 c3bxzA_ not modelled 11.4 18 PDB header:transport protein Chain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca 94 c1zq1B_ not modelled 11.0 28 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 95 c2qsdB_ not modelled 11.0 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of a protein il1583 from idiomarina loihiensis 96 d1t6t1_ not modelled 10.8 9 Fold:Toprim domain Superfamily:Toprim domain Family:Toprim domain 97 c3u62A_ not modelled 10.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from thermotoga maritima 98 c3b9qA_ not modelled 10.4 25 PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana 99 c3fshC_ not modelled 10.1 55 PDB header:ligase Chain: C: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: crystal structure of the ubiquitin conjugating enzyme2 ube2g2 bound to the g2br domain of ubiquitin ligase gp78