Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP06864
DateThu Jan 5 10:59:27 GMT 2012
Unique Job IDde0c3862a9060e5a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3mv14_
Top template information
PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
Confidence and coverage
Confidence:100.0% Coverage: 95%
977 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVP
Secondary structure 
SS confidence 
Disorder  ????
?????????
??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  EAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLS
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQW
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTL
Secondary structure 
SS confidence 
Disorder 
???????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  KDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQW
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  EKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  EVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGH
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  YVWEWCDHGIQAQDDHGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  PVKIHARDLTRGELKVENKLWFTTLDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQ
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  ITLPQLDAREAFLNITVTKDSRTRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLE
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  DDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQ
Secondary structure 
SS confidence 
Disorder 
?
?
?
??
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  PNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  ERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENY
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........910.........920.........930.........940.........950.........960
Sequence  PFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  TLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFF
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........1030
Sequence  STNLHSENKQ
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3mv1 chain 4

3D model

Region: 2 - 998
Aligned: 977
Modelled: 997
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium

Phyre2

PDB 1jz6 chain C

3D model

Region: 2 - 998
Aligned: 975
Modelled: 997
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole

Phyre2

PDB 3bga chain B

3D model

Region: 1 - 1001
Aligned: 977
Modelled: 983
Confidence: 100.0%
Identity: 32%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482

Phyre2

PDB 3oba chain A

3D model

Region: 2 - 998
Aligned: 959
Modelled: 978
Confidence: 100.0%
Identity: 36%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis

Phyre2

PDB 1yq2 chain C

3D model

Region: 1 - 999
Aligned: 947
Modelled: 983
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)

Phyre2

PDB 3gm8 chain A

3D model

Region: 40 - 732
Aligned: 641
Modelled: 677
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus

Phyre2

PDB 3fn9 chain B

3D model

Region: 38 - 695
Aligned: 596
Modelled: 623
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis

Phyre2

PDB 3cmg chain A

3D model

Region: 39 - 682
Aligned: 596
Modelled: 618
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis

Phyre2

PDB 2je8 chain B

3D model

Region: 36 - 737
Aligned: 661
Modelled: 688
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-mannosidase;
PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron

Phyre2

PDB 3lpg chain A

3D model

Region: 36 - 612
Aligned: 525
Modelled: 537
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea

Phyre2

PDB 2vzv chain B

3D model

Region: 36 - 738
Aligned: 685
Modelled: 702
Confidence: 100.0%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan

Phyre2

PDB 1bhg chain B

3D model

Region: 34 - 602
Aligned: 520
Modelled: 536
Confidence: 100.0%
Identity: 24%
PDB header:glycosidase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: human beta-glucuronidase at 2.6 a resolution

Phyre2

PDB 1jz8 chain A domain 4

3D model

Region: 710 - 998
Aligned: 280
Modelled: 289
Confidence: 100.0%
Identity: 21%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: beta-Galactosidase, domain 5

Phyre2

PDB 1yq2 chain A domain 4

3D model

Region: 713 - 999
Aligned: 272
Modelled: 284
Confidence: 100.0%
Identity: 24%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: beta-Galactosidase, domain 5

Phyre2

PDB 1yq2 chain A domain 5

3D model

Region: 320 - 600
Aligned: 281
Modelled: 281
Confidence: 100.0%
Identity: 43%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2

PDB 1jz8 chain A domain 5

3D model

Region: 319 - 600
Aligned: 279
Modelled: 282
Confidence: 100.0%
Identity: 43%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2

PDB 1jz8 chain A domain 3

3D model

Region: 2 - 207
Aligned: 204
Modelled: 206
Confidence: 100.0%
Identity: 42%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: beta-Galactosidase/glucuronidase, N-terminal domain

Phyre2

PDB 1yq2 chain A domain 3

3D model

Region: 1 - 208
Aligned: 194
Modelled: 194
Confidence: 100.0%
Identity: 39%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: beta-Galactosidase/glucuronidase, N-terminal domain

Phyre2

PDB 2je8 chain A domain 5

3D model

Region: 318 - 601
Aligned: 268
Modelled: 284
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2

PDB 2vzs chain A domain 5

3D model

Region: 324 - 600
Aligned: 272
Modelled: 277
Confidence: 100.0%
Identity: 13%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2
1
c3mv14_
2
c1jz6C_
3
c3bgaB_
4
c3obaA_
5
c1yq2C_
6
c3gm8A_
7
c3fn9B_
8
c3cmgA_
9
c2je8B_
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c3lpgA_
11
c2vzvB_
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c1bhgB_
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d1jz8a4
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d1yq2a4
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d1yq2a5
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d1jz8a5
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d1jz8a3
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d1yq2a3
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d2je8a5
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d2vzsa5
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3mv14_
100.0 33 PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
2c1jz6C_
100.0 34 PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole
3c3bgaB_
100.0 32 PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
4c3obaA_
100.0 36 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
5c1yq2C_
100.0 33 PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)
6c3gm8A_
100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
7c3fn9B_
100.0 23 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
8c3cmgA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
9c2je8B_
100.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:beta-mannosidase;
PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron
10c3lpgA_
100.0 24 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea
11c2vzvB_
100.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan
12c1bhgB_
100.0 24 PDB header:glycosidase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: human beta-glucuronidase at 2.6 a resolution
13d1jz8a4
100.0 21 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
14d1yq2a4
100.0 24 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
15d1yq2a5
100.0 43 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
16d1jz8a5
100.0 43 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
17d1jz8a3
100.0 42 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
18d1yq2a3
100.0 39 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
19d2je8a5
100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
20d2vzsa5
100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
21d1uuqa_
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
22c1uz4A_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
23d1bhga3
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
24d1tg7a5
not modelled 100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
25d1bhga2
not modelled 100.0 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
26d2je8a4
not modelled 100.0 20 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
27c2w62A_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:glycolipid-anchored surface protein 2;
PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose
28d2c0ha1
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
29d2vzsa4
not modelled 100.0 20 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
30d1wkya2
not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
31d1rh9a1
not modelled 99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
32d1qnra_
not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
33c3jugA_
not modelled 99.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
34d1tvna1
not modelled 99.9 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
35d1bqca_
not modelled 99.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
36d7a3ha_
not modelled 99.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
37d1egza_
not modelled 99.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
38c3pzvB_
not modelled 99.9 18 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168
39c2cksB_
not modelled 99.9 14 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5)
40d1tg7a2
not modelled 99.9 16 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Beta-galactosidase LacA, domains 4 and 5
41c3civA_
not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius
42d1ecea_
not modelled 99.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
43c3thdD_
not modelled 99.9 18 PDB header:hydrolase
Chain: D: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin
44c1wkyA_
not modelled 99.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module
45d1yq2a1
not modelled 99.8 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
46d1jz8a2
not modelled 99.8 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
47d1jz8a1
not modelled 99.8 32 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
48c2zunB_
not modelled 99.7 17 PDB header:hydrolase
Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase;
PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii
49c3d3aA_
not modelled 99.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron
50c3ogrA_
not modelled 99.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose
51c1xc6A_
not modelled 99.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose
52d1kwga2
not modelled 99.7 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
53d2vzsa1
not modelled 99.6 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
54c2oylB_
not modelled 99.6 17 PDB header:hydrolase
Chain: B: PDB Molecule:endoglycoceramidase ii;
PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex
55c1kwgA_
not modelled 99.5 21 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
56d2je8a1
not modelled 99.5 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
57d1g01a_
not modelled 99.5 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
58c3pzqA_
not modelled 99.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol
59d1vjza_
not modelled 99.5 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
60d1tg7a3
not modelled 99.4 18 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Beta-galactosidase LacA, domains 4 and 5
61d1yq2a2
not modelled 99.4 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
62d1hjqa_
not modelled 99.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
63d1bhga1
not modelled 99.4 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
64c3ncoA_
not modelled 99.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase fncel5a;
PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1
65d1ceoa_
not modelled 99.3 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
66c2jepB_
not modelled 99.2 14 PDB header:hydrolase
Chain: B: PDB Molecule:xyloglucanase;
PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli
67d1vbua1
not modelled 99.2 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
68c3l55B_
not modelled 99.2 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase;
PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii
69d1hjsa_
not modelled 99.2 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
70c3aysA_
not modelled 99.2 14 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose
71d1h1na_
not modelled 99.2 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
72c3mmwB_
not modelled 99.1 12 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima
73d1w91a2
not modelled 99.1 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
74c3icgD_
not modelled 99.1 15 PDB header:hydrolase
Chain: D: PDB Molecule:endoglucanase d;
PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
75c3qr3B_
not modelled 99.1 13 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase eg-ii;
PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei)
76d1nq6a_
not modelled 99.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
77d1uhva2
not modelled 99.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
78d1ur4a_
not modelled 99.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
79c2y8kA_
not modelled 99.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: structure of ctgh5-cbm6, an arabinoxylan-specific xylanase.
80d1v6wa2
not modelled 99.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
81d1v6ya_
not modelled 99.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
82c3ndyA_
not modelled 98.9 13 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
83c3u7vA_
not modelled 98.9 11 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
84d1v0la_
not modelled 98.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
85d1edga_
not modelled 98.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
86c3kzsD_
not modelled 98.9 17 PDB header:hydrolase
Chain: D: PDB Molecule:glycosyl hydrolase family 5;
PDBTitle: crystal structure of glycosyl hydrolase family 5 (np_809925.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
87d1fh9a_
not modelled 98.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
88d1us3a2
not modelled 98.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
89d1n82a_
not modelled 98.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
90d1i1wa_
not modelled 98.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
91c2bs9B_
not modelled 98.8 15 PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylosidase;
PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus
92d1w32a_
not modelled 98.8 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
93d2pb1a1
not modelled 98.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
94d1ta3b_
not modelled 98.8 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
95d1h4pa_
not modelled 98.7 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
96c3emzA_
not modelled 98.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative
97d1bg4a_
not modelled 98.7 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
98c1xyzA_
not modelled 98.6 15 PDB header:glycosyltransferase
Chain: A: PDB Molecule:1,4-beta-d-xylan-xylanohydrolase;
PDBTitle: a common protein fold and similar active site in two2 distinct families of beta-glycanases
99d1xyza_
not modelled 98.6 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
100d1tuxa_
not modelled 98.6 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
101d1ur1a_
not modelled 98.6 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
102d1foba_
not modelled 98.6 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
103c2depA_
not modelled 98.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:thermostable celloxylanase;
PDBTitle: crystal structure of xylanase b from clostridium2 stercorarium f9
104c2cncA_
not modelled 98.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:endoxylanase;
PDBTitle: family 10 xylanase
105c2okxB_
not modelled 98.5 17 PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
106d1ug6a_
not modelled 98.5 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
107c1uhvD_
not modelled 98.5 16 PDB header:hydrolase
Chain: D: PDB Molecule:beta-xylosidase;
PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase
108c3ahxC_
not modelled 98.2 18 PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase a;
PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans
109c2z1sA_
not modelled 98.2 25 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase b;
PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose
110d1e4ia_
not modelled 98.1 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
111c2j75A_
not modelled 98.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
112c3qomA_
not modelled 98.1 19 PDB header:hydrolase
Chain: A: PDB Molecule:6-phospho-beta-glucosidase;
PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum
113d1r85a_
not modelled 98.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
114d1vffa1
not modelled 98.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
115c3fiyA_
not modelled 97.9 25 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of bglb
116c3pn8A_
not modelled 97.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative phospho-beta-glucosidase;
PDBTitle: the crystal structure of 6-phospho-beta-glucosidase from streptococcus2 mutans ua159
117d1aq0a_
not modelled 97.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
118d2cyga1
not modelled 97.8 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
119d1qoxa_
not modelled 97.7 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
120c1iszA_
not modelled 97.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-d-xylanase;
PDBTitle: crystal structure of xylanase from streptomyces2 olivaceoviridis e-86 complexed with galactose

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0