Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP17444
DateThu Jan 5 11:36:11 GMT 2012
Unique Job IDd1b722bae39b89ef

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3fimB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:aryl-alcohol oxidase;
PDBTitle: crystal structure of aryl-alcohol-oxidase from pleurotus eryingii
Confidence and coverage
Confidence:100.0% Coverage: 96%
532 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRY
Secondary structure 
SS confidence 
Disorder  ???
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  NWAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNALDLDNWAQEPGLENWSYLD
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  CLPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRTDDLNGYQ
Secondary structure 
SS confidence 
Disorder 
?
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  QEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDGKRAVGVEWLEG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  DSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHELPGVGENLQDHL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  EMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAWPNI
Secondary structure 
SS confidence 
Disorder 
??????????????
?
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQD
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  WQEFRDAIRITREIMHQPALDQYRGREISPGVECQTDEQLDEFVRNHAETAFHPCGTCKM
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKIADMIRGQEALPRS
Secondary structure 
SS confidence 
Disorder 
???
??????
Disorder confidence 
 
   .........550......
Sequence  TAGYFVANGMPVRAKK
Secondary structure 
SS confidence 
Disorder  ?
??????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3fim chain B

3D model

Region: 2 - 534
Aligned: 532
Modelled: 533
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:aryl-alcohol oxidase;
PDBTitle: crystal structure of aryl-alcohol-oxidase from pleurotus eryingii

Phyre2

PDB 1cf3 chain A

3D model

Region: 2 - 536
Aligned: 531
Modelled: 535
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger

Phyre2

PDB 2jbv chain A

3D model

Region: 2 - 532
Aligned: 504
Modelled: 507
Confidence: 100.0%
Identity: 38%
PDB header:oxidoreductase
Chain: A: PDB Molecule:choline oxidase;
PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism

Phyre2

PDB 1gpe chain A

3D model

Region: 2 - 536
Aligned: 530
Modelled: 535
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from penicillium amagasakiense

Phyre2

PDB 3q9t chain B

3D model

Region: 2 - 535
Aligned: 526
Modelled: 530
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins;
PDBTitle: crystal structure analysis of formate oxidase

Phyre2

PDB 1naa chain B

3D model

Region: 2 - 538
Aligned: 515
Modelled: 529
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: cellobiose dehydrogenase flavoprotein fragment in complex with2 cellobionolactam

Phyre2

PDB 1ju2 chain A

3D model

Region: 2 - 534
Aligned: 475
Modelled: 487
Confidence: 100.0%
Identity: 25%
PDB header:lyase
Chain: A: PDB Molecule:hydroxynitrile lyase;
PDBTitle: crystal structure of the hydroxynitrile lyase from almond

Phyre2

PDB 2gew chain A

3D model

Region: 2 - 534
Aligned: 459
Modelled: 486
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: atomic resolution structure of cholesterol oxidase @ ph 9.02 (streptomyces sp. sa-coo)

Phyre2

PDB 1coy chain A

3D model

Region: 2 - 535
Aligned: 459
Modelled: 486
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase(oxygen receptor)
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase complexed with a2 steroid substrate. implications for fad dependent alcohol3 oxidases

Phyre2

PDB 1cf3 chain A domain 1

3D model

Region: 2 - 536
Aligned: 348
Modelled: 351
Confidence: 100.0%
Identity: 34%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 2igo chain G

3D model

Region: 1 - 541
Aligned: 504
Modelled: 512
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: G: PDB Molecule:pyranose oxidase;
PDBTitle: crystal structure of pyranose 2-oxidase h167a mutant with 2-2 fluoro-2-deoxy-d-glucose

Phyre2

PDB 2f5v chain A

3D model

Region: 1 - 535
Aligned: 499
Modelled: 520
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyranose 2-oxidase;
PDBTitle: reaction geometry and thermostability mutant of pyranose 2-oxidase2 from the white-rot fungus peniophora sp.

Phyre2

PDB 1gpe chain A domain 1

3D model

Region: 2 - 536
Aligned: 347
Modelled: 351
Confidence: 100.0%
Identity: 34%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 1kdg chain A domain 1

3D model

Region: 2 - 538
Aligned: 351
Modelled: 352
Confidence: 100.0%
Identity: 28%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 1n4w chain A domain 1

3D model

Region: 2 - 534
Aligned: 328
Modelled: 353
Confidence: 100.0%
Identity: 25%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 3cox chain A domain 1

3D model

Region: 2 - 535
Aligned: 328
Modelled: 350
Confidence: 100.0%
Identity: 23%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 2f5v chain A domain 1

3D model

Region: 1 - 541
Aligned: 337
Modelled: 343
Confidence: 100.0%
Identity: 20%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 1ju2 chain A domain 1

3D model

Region: 2 - 302
Aligned: 272
Modelled: 285
Confidence: 100.0%
Identity: 27%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 1gpe chain A domain 2

3D model

Region: 295 - 477
Aligned: 183
Modelled: 183
Confidence: 99.7%
Identity: 17%
Fold: FAD-linked reductases, C-terminal domain
Superfamily: FAD-linked reductases, C-terminal domain
Family: GMC oxidoreductases

Phyre2

PDB 1cf3 chain A domain 2

3D model

Region: 295 - 477
Aligned: 183
Modelled: 183
Confidence: 99.6%
Identity: 19%
Fold: FAD-linked reductases, C-terminal domain
Superfamily: FAD-linked reductases, C-terminal domain
Family: GMC oxidoreductases

Phyre2
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c3fimB_
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c1cf3A_
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c2jbvA_
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c1gpeA_
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c3q9tB_
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c1naaB_
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c1ju2A_
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c2gewA_
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c1coyA_
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d1cf3a1
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c2igoG_
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c2f5vA_
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d1gpea1
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d1kdga1
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d1n4wa1
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d3coxa1
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d2f5va1
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d1ju2a1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fimB_
100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:aryl-alcohol oxidase;
PDBTitle: crystal structure of aryl-alcohol-oxidase from pleurotus eryingii
2c1cf3A_
100.0 29 PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger
3c2jbvA_
100.0 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:choline oxidase;
PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism
4c1gpeA_
100.0 26 PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from penicillium amagasakiense
5c3q9tB_
100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins;
PDBTitle: crystal structure analysis of formate oxidase
6c1naaB_
100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: cellobiose dehydrogenase flavoprotein fragment in complex with2 cellobionolactam
7c1ju2A_
100.0 25 PDB header:lyase
Chain: A: PDB Molecule:hydroxynitrile lyase;
PDBTitle: crystal structure of the hydroxynitrile lyase from almond
8c2gewA_
100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: atomic resolution structure of cholesterol oxidase @ ph 9.02 (streptomyces sp. sa-coo)
9c1coyA_
100.0 17 PDB header:oxidoreductase(oxygen receptor)
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase complexed with a2 steroid substrate. implications for fad dependent alcohol3 oxidases
10d1cf3a1
100.0 34 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
11c2igoG_
100.0 14 PDB header:oxidoreductase
Chain: G: PDB Molecule:pyranose oxidase;
PDBTitle: crystal structure of pyranose 2-oxidase h167a mutant with 2-2 fluoro-2-deoxy-d-glucose
12c2f5vA_
100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyranose 2-oxidase;
PDBTitle: reaction geometry and thermostability mutant of pyranose 2-oxidase2 from the white-rot fungus peniophora sp.
13d1gpea1
100.0 34 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
14d1kdga1
100.0 28 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
15d1n4wa1
100.0 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
16d3coxa1
100.0 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
17d2f5va1
100.0 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
18d1ju2a1
100.0 27 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
19d1gpea2
99.7 17 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GMC oxidoreductases
20d1cf3a2
99.6 19 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GMC oxidoreductases
21c1yq4A_
not modelled 99.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
22c3p4rM_
not modelled 99.6 17 PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
23c1kf6A_
not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
24d1d5ta1
not modelled 99.5 10 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
25c1qo8A_
not modelled 99.5 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
26c1d4cB_
not modelled 99.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
27c2aczA_
not modelled 99.5 21 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
28c1jrxA_
not modelled 99.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
29d1kf6a2
not modelled 99.5 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
30c2bs3A_
not modelled 99.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
31c2fjaC_
not modelled 99.4 17 PDB header:oxidoreductase
Chain: C: PDB Molecule:adenylylsulfate reductase, subunit a;
PDBTitle: adenosine 5'-phosphosulfate reductase in complex with2 substrate
32d1ju2a2
not modelled 99.4 17 Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GMC oxidoreductases
33d1y0pa2
not modelled 99.4 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
34c2rghA_
not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
35c2rgoA_
not modelled 99.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
36d1qo8a2
not modelled 99.3 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
37d2bcgg1
not modelled 99.3 11 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
38d2bs2a2
not modelled 99.3 12 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
39d1neka2
not modelled 99.3 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
40d2i0za1
not modelled 99.3 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
41c2r4jA_
not modelled 99.3 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
42c1gndA_
not modelled 99.2 12 PDB header:gtpase activation
Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor;
PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
43d2gf3a1
not modelled 99.2 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
44c1zkqA_
not modelled 99.2 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
45c3dgzA_
not modelled 99.2 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
46d2gqfa1
not modelled 99.2 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
47c3da1A_
not modelled 99.2 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
48c3dmeB_
not modelled 99.2 13 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
49d1pj5a2
not modelled 99.2 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
50d1d4ca2
not modelled 99.2 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
51c3gyxA_
not modelled 99.2 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
52c1pj6A_
not modelled 99.2 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
53c2c3dB_
not modelled 99.1 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
54c1zmcG_
not modelled 99.1 15 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
55c2zxiC_
not modelled 99.1 22 PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
56c2nvkX_
not modelled 99.1 19 PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
57d1chua2
not modelled 99.1 26 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
58c3ka7A_
not modelled 99.1 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
59c3jskN_
not modelled 99.1 29 PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
60c3cpiH_
not modelled 99.1 11 PDB header:protein transport
Chain: H: PDB Molecule:rab gdp-dissociation inhibitor;
PDBTitle: crystal structure of yeast rab-gdi
61c2olnA_
not modelled 99.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
62d1ryia1
not modelled 99.0 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
63c3g05B_
not modelled 99.0 27 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
64c1hyuA_
not modelled 99.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
65d1rp0a1
not modelled 99.0 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Thi4-like
66c3cp8C_
not modelled 99.0 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
67c3urhB_
not modelled 99.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
68c3cesB_
not modelled 98.9 28 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
69c2e5vA_
not modelled 98.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate oxidase;
PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii
70c2gahB_
not modelled 98.9 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
71c2i0zA_
not modelled 98.9 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
72c3fbsB_
not modelled 98.9 42 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
73c1chuA_
not modelled 98.9 24 PDB header:flavoenzyme
Chain: A: PDB Molecule:protein (l-aspartate oxidase);
PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family
74c3nlcA_
not modelled 98.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vp0956;
PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
75c3djeA_
not modelled 98.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
76d2cula1
not modelled 98.8 27 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GidA-like
77c3v76A_
not modelled 98.8 19 PDB header:flavoprotein
Chain: A: PDB Molecule:flavoprotein;
PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti
78c3l8kB_
not modelled 98.8 35 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoyl dehydrogenase from2 sulfolobus solfataricus
79c3o0hA_
not modelled 98.8 28 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
80c2gqfA_
not modelled 98.8 36 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0933;
PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd
81c1ltxR_
not modelled 98.8 25 PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
82d1vg0a1
not modelled 98.8 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
83c3rhaA_
not modelled 98.8 35 PDB header:oxidoreductase
Chain: A: PDB Molecule:putrescine oxidase;
PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens
84c1m6iA_
not modelled 98.7 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:programmed cell death protein 8;
PDBTitle: crystal structure of apoptosis inducing factor (aif)
85c1ebdB_
not modelled 98.7 28 PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
86c3p1wA_
not modelled 98.7 25 PDB header:protein transport
Chain: A: PDB Molecule:rabgdi protein;
PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c
87c1gv4A_
not modelled 98.7 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:programed cell death protein 8;
PDBTitle: murine apoptosis-inducing factor (aif)
88d2gmha1
not modelled 98.7 37 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
89c2yg4B_
not modelled 98.7 38 PDB header:oxidoreductase
Chain: B: PDB Molecule:putrescine oxidase;
PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
90d1jnra2
not modelled 98.7 27 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
91c3ic9D_
not modelled 98.7 31 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
92d1ebda1
not modelled 98.7 29 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
93c3atrA_
not modelled 98.7 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
94c3d8xB_
not modelled 98.7 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
95d1onfa1
not modelled 98.7 38 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
96c1s3bB_
not modelled 98.7 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
97d1lpfa1
not modelled 98.7 31 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
98c2vvlD_
not modelled 98.7 36 PDB header:oxidoreductase
Chain: D: PDB Molecule:monoamine oxidase n;
PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
99c2q7vA_
not modelled 98.7 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
100c2hqmB_
not modelled 98.7 38 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
101c3ctyA_
not modelled 98.7 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
102c1ojtA_
not modelled 98.7 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase
103c2zbwA_
not modelled 98.7 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
104c1w4xA_
not modelled 98.7 28 PDB header:oxygenase
Chain: A: PDB Molecule:phenylacetone monooxygenase;
PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
105d1gesa1
not modelled 98.6 35 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
106c1dxlC_
not modelled 98.6 28 PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
107c2cfyB_
not modelled 98.6 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
108c3f8rD_
not modelled 98.6 26 PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase (trxb-3);
PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
109c1f6mF_
not modelled 98.6 23 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
110c3k7tB_
not modelled 98.6 40 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase;
PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121
111c2eq8E_
not modelled 98.6 39 PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
112c2w0hA_
not modelled 98.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
113c2a8xA_
not modelled 98.6 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
114c1geuA_
not modelled 98.6 34 PDB header:oxidoreductase(flavoenzyme)
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: anatomy of an engineered nad-binding site
115c1bwcA_
not modelled 98.6 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
116d1v59a1
not modelled 98.6 31 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
117c1v59B_
not modelled 98.6 31 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
118d1o5wa1
not modelled 98.6 40 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
119c2uzzD_
not modelled 98.6 35 PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
120d3lada1
not modelled 98.6 33 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0