Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A8S1
DateThu Jan 5 11:08:37 GMT 2012
Unique Job IDce1e55fcab0ef8c8

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3ispA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 97%
288 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPT
Secondary structure 
SS confidence 
Disorder  ?????
?
??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  EQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIR
Secondary structure 
SS confidence 
Disorder 
????????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVSSKPFAEKYFPNG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  VTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMI
Secondary structure 
SS confidence 
Disorder  ?
??
Disorder confidence 
 
   .........250.........260.........270.........280.........290.......
Sequence  PHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3isp chain A

3D model

Region: 3 - 295
Aligned: 288
Modelled: 293
Confidence: 100.0%
Identity: 33%
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis

Phyre2

PDB 3hhg chain F

3D model

Region: 3 - 295
Aligned: 292
Modelled: 293
Confidence: 100.0%
Identity: 15%
PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.

Phyre2

PDB 2esn chain C

3D model

Region: 1 - 292
Aligned: 286
Modelled: 292
Confidence: 100.0%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa

Phyre2

PDB 1iz1 chain B

3D model

Region: 4 - 292
Aligned: 288
Modelled: 289
Confidence: 100.0%
Identity: 12%
PDB header:dna binding protein
Chain: B: PDB Molecule:lysr-type regulatory protein;
PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator

Phyre2

PDB 3t1b chain B

3D model

Region: 4 - 289
Aligned: 283
Modelled: 286
Confidence: 100.0%
Identity: 11%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: crystal structure of the full-length aphb n100e variant

Phyre2

PDB 3fzj chain C

3D model

Region: 4 - 290
Aligned: 287
Modelled: 287
Confidence: 100.0%
Identity: 15%
PDB header:transcription regulator
Chain: C: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: tsar low resolution crystal structure, tetragonal form

Phyre2

PDB 3fzv chain C

3D model

Region: 4 - 290
Aligned: 277
Modelled: 274
Confidence: 100.0%
Identity: 17%
PDB header:transcription regulator
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa

Phyre2

PDB 1b9n chain A

3D model

Region: 4 - 107
Aligned: 104
Modelled: 104
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:protein (mode);
PDBTitle: regulator from escherichia coli

Phyre2

PDB 3fd3 chain A

3D model

Region: 90 - 295
Aligned: 205
Modelled: 205
Confidence: 99.9%
Identity: 30%
PDB header:transcription regulator
Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein;
PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58.

Phyre2

PDB 2esn chain A domain 1

3D model

Region: 1 - 84
Aligned: 84
Modelled: 84
Confidence: 99.9%
Identity: 26%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: LysR-like transcriptional regulators

Phyre2

PDB 3m1e chain A

3D model

Region: 4 - 89
Aligned: 86
Modelled: 86
Confidence: 99.8%
Identity: 27%
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd

Phyre2

PDB 1b9m chain A domain 1

3D model

Region: 4 - 95
Aligned: 92
Modelled: 92
Confidence: 99.8%
Identity: 15%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: N-terminal domain of molybdate-dependent transcriptional regulator ModE

Phyre2

PDB 1ixc chain A domain 1

3D model

Region: 4 - 92
Aligned: 84
Modelled: 88
Confidence: 99.8%
Identity: 19%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: LysR-like transcriptional regulators

Phyre2

PDB 2ijl chain B

3D model

Region: 3 - 86
Aligned: 84
Modelled: 84
Confidence: 99.7%
Identity: 17%
PDB header:transcription
Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor;
PDBTitle: the structure of a putative mode from agrobacterium tumefaciens.

Phyre2

PDB 3oxn chain D

3D model

Region: 87 - 296
Aligned: 208
Modelled: 210
Confidence: 99.7%
Identity: 11%
PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator, lysr family;
PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus

Phyre2

PDB 2hxr chain A

3D model

Region: 92 - 290
Aligned: 198
Modelled: 199
Confidence: 99.7%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator cynr;
PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism

Phyre2

PDB 2fyi chain A domain 1

3D model

Region: 86 - 297
Aligned: 210
Modelled: 212
Confidence: 99.7%
Identity: 13%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 1uth chain A

3D model

Region: 87 - 292
Aligned: 205
Modelled: 206
Confidence: 99.7%
Identity: 8%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 2uye chain A

3D model

Region: 87 - 292
Aligned: 205
Modelled: 206
Confidence: 99.7%
Identity: 8%
PDB header:transcription
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate

Phyre2

PDB 1al3 chain A

3D model

Region: 88 - 296
Aligned: 208
Modelled: 209
Confidence: 99.7%
Identity: 12%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
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c3ispA_
2
c3hhgF_
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c2esnC_
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c1iz1B_
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c3t1bB_
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c3fzjC_
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c3fzvC_
8
c1b9nA_
9
c3fd3A_
10
d2esna1
11
c3m1eA_
12
d1b9ma1
13
d1ixca1
14
c2ijlB_
15
c3oxnD_
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c2hxrA_
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d2fyia1
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d1utha_
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c2uyeA_
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d1al3a_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ispA_
100.0 33 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis
2c3hhgF_
100.0 15 PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.
3c2esnC_
100.0 16 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of probable transcriptional regulator pa04772 from pseudomonas aeruginosa
4c1iz1B_
100.0 12 PDB header:dna binding protein
Chain: B: PDB Molecule:lysr-type regulatory protein;
PDBTitle: crystal structure of cbnr, a lysr family transcriptional2 regulator
5c3t1bB_
100.0 11 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: crystal structure of the full-length aphb n100e variant
6c3fzjC_
100.0 15 PDB header:transcription regulator
Chain: C: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: tsar low resolution crystal structure, tetragonal form
7c3fzvC_
100.0 17 PDB header:transcription regulator
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa
8c1b9nA_
99.9 15 PDB header:transcription
Chain: A: PDB Molecule:protein (mode);
PDBTitle: regulator from escherichia coli
9c3fd3A_
99.9 30 PDB header:transcription regulator
Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein;
PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58.
10d2esna1
99.9 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LysR-like transcriptional regulators
11c3m1eA_
99.8 27 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
12d1b9ma1
99.8 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of molybdate-dependent transcriptional regulator ModE
13d1ixca1
99.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LysR-like transcriptional regulators
14c2ijlB_
99.7 17 PDB header:transcription
Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor;
PDBTitle: the structure of a putative mode from agrobacterium tumefaciens.
15c3oxnD_
99.7 11 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator, lysr family;
PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus
16c2hxrA_
99.7 16 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator cynr;
PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism
17d2fyia1
99.7 13 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
18d1utha_
99.7 8 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
19c2uyeA_
99.7 8 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate
20d1al3a_
99.7 12 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
21c1al3A_
not modelled 99.7 12 PDB header:transcription regulation
Chain: A: PDB Molecule:cys regulon transcriptional activator cysb;
PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes
22c2h9qC_
not modelled 99.6 12 PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional regulator catm;
PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h)
23c2ql3G_
not modelled 99.6 15 PDB header:transcription
Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein;
PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1
24c3kosA_
not modelled 99.6 15 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator ampr;
PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii
25c3jv9B_
not modelled 99.6 14 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: the structure of a reduced form of oxyr from n. meningitidis
26d1ixca2
not modelled 99.6 9 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
27c3hhfB_
not modelled 99.6 16 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis.
28d2esna2
not modelled 99.6 10 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
29c2f7cA_
not modelled 99.6 12 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator catm;
PDBTitle: catm effector binding domain with its effector cis,cis-muconate
30c3ho7A_
not modelled 99.6 14 PDB header:transcription
Chain: A: PDB Molecule:oxyr;
PDBTitle: crystal structure of oxyr from porphyromonas gingivalis
31d1i6aa_
not modelled 99.6 11 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
32c2h9bB_
not modelled 99.5 12 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s)
33c3n6uA_
not modelled 99.5 11 PDB header:transcription regulator
Chain: A: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate
34c2f78A_
not modelled 99.5 12 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: benm effector binding domain with its effector benzoate
35c3mz1D_
not modelled 99.4 16 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021
36c3onmB_
not modelled 99.3 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator lrha;
PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis
37c2qsxB_
not modelled 98.9 13 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional regulator, lysr family;
PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus
38c3ctaA_
not modelled 97.5 16 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
39c2x4hA_
not modelled 97.4 17 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
40c3boqB_
not modelled 97.3 12 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcriptional regulator from2 silicibacter pomeroyi
41c2fa5B_
not modelled 97.0 10 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
42c3onqB_
not modelled 96.9 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:regulator of polyketide synthase expression;
PDBTitle: crystal structure of regulator of polyketide synthase expression2 bad_0249 from bifidobacterium adolescentis
43c3nrvC_
not modelled 96.9 14 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
44c2nyxB_
not modelled 96.8 10 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
45d2fbha1
not modelled 96.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
46c3bpxB_
not modelled 96.7 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
47d1jgsa_
not modelled 96.6 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
48c2h09A_
not modelled 96.5 24 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
49d1lnwa_
not modelled 96.5 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
50d2fxaa1
not modelled 96.5 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
51c2gxgA_
not modelled 96.5 19 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
52c3fm5D_
not modelled 96.5 15 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
53d1ub9a_
not modelled 96.5 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
54c3cdhB_
not modelled 96.5 11 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
55d2hr3a1
not modelled 96.4 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
56d1lj9a_
not modelled 96.3 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
57c2fxaB_
not modelled 96.3 10 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
58c3f3xA_
not modelled 96.3 21 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
59d2bv6a1
not modelled 96.3 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
60c3e6mD_
not modelled 96.3 15 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
61d1s3ja_
not modelled 96.2 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
62d1p4xa1
not modelled 96.2 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
63c2zkzC_
not modelled 96.2 13 PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
64c2dbbA_
not modelled 96.0 23 PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
65c3hrmA_
not modelled 96.0 19 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarz;
PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
66c3cuoB_
not modelled 96.0 11 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
67d2frha1
not modelled 96.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
68c2nnnB_
not modelled 95.9 8 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
69c3bddD_
not modelled 95.9 25 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein marr;
PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
70c2pexA_
not modelled 95.9 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
71d3deua1
not modelled 95.9 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
72c2kkoB_
not modelled 95.9 20 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
73d2fbka1
not modelled 95.9 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
74d3ctaa1
not modelled 95.8 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
75c3nqoB_
not modelled 95.8 13 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
76c2pijB_
not modelled 95.8 27 PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
77c3cjnA_
not modelled 95.7 10 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
78c3jthA_
not modelled 95.7 19 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
79c2ia0A_
not modelled 95.7 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
80c3bjaA_
not modelled 95.7 5 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
81c3g3zA_
not modelled 95.7 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
82c2oqgA_
not modelled 95.7 12 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
83d1d1la_
not modelled 95.7 32 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
84c2e1cA_
not modelled 95.6 14 PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
85c2rdpA_
not modelled 95.6 11 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
86d1u2wa1
not modelled 95.6 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
87c3ecoB_
not modelled 95.6 20 PDB header:transcription
Chain: B: PDB Molecule:mepr;
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
88d2cg4a1
not modelled 95.6 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
89d4croa_
not modelled 95.5 32 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
90c1i1gA_
not modelled 95.5 34 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
91d1i1ga1
not modelled 95.5 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
92c2e7xA_
not modelled 95.5 32 PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
93d2cyya1
not modelled 95.4 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
94d1sfxa_
not modelled 95.4 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
95c3hruA_
not modelled 95.4 20 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
96d1r1ua_
not modelled 95.4 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
97c2cg4B_
not modelled 95.4 16 PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
98c1g3wA_
not modelled 95.4 22 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
99c2vbzA_
not modelled 95.2 25 PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
100c1zljE_
not modelled 95.2 10 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
101d1p4xa2
not modelled 95.2 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
102d2d1ha1
not modelled 95.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
103c2wteB_
not modelled 95.2 14 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
104c1f5tA_
not modelled 95.1 20 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
105c3oopA_
not modelled 95.1 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
106d1g2ha_
not modelled 95.1 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
107c3s2wB_
not modelled 95.1 21 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
108d1ntca_
not modelled 95.1 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
109d2fbia1
not modelled 95.1 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
110c2cfxD_
not modelled 95.1 20 PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
111d1biaa1
not modelled 95.0 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
112d3orca_
not modelled 95.0 32 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
113c2gqqB_
not modelled 95.0 18 PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
114c3f6vA_
not modelled 94.9 18 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
115c2l4aA_
not modelled 94.9 18 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
116d2cfxa1
not modelled 94.8 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
117c1r22B_
not modelled 94.8 33 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
118c3f6oB_
not modelled 94.8 11 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
119c3k0lA_
not modelled 94.8 15 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
120c3kp3B_
not modelled 94.8 16 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0