Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	I	T	I	K	R	W	G	N	S	A	G	M	V	I	P	N	I	V	M	K	E	L	N	L	Q	P	G	Q	S	V	E	A	Q	V	S	N	N	Q	L	I	L	T	P	I	S	R	R	Y	S	L	D	E	L	L	A	Q	C	D
Secondary structure
SS confidence
Disorder		?	?																																				?	?								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Sequence		M	N	A	A	E	L	S	E	Q	D	V	W	G	K	S	T	P	A	G	D	E	I	W
Secondary structure
SS confidence
Disorder		?	?	?	?							?	?		?		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ub4 chain C Region: 1 - 74 Aligned: 72 Modelled: 74 Confidence: 99.9% Identity: 32% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 1mvf chain D Region: 3 - 46 Aligned: 44 Modelled: 44 Confidence: 99.6% Identity: 36% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: Kis/PemI addiction antidote Phyre2 PDB 3zvk chain G Region: 2 - 57 Aligned: 49 Modelled: 56 Confidence: 98.6% Identity: 16% PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter Phyre2 PDB 3tnd chain F Region: 2 - 68 Aligned: 60 Modelled: 67 Confidence: 98.2% Identity: 20% PDB header:translation, toxin Chain: F: PDB Molecule:antitoxin vapb; PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex Phyre2 PDB 1yfb chain A domain 1 Region: 14 - 48 Aligned: 35 Modelled: 35 Confidence: 97.0% Identity: 23% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2fy9 chain A domain 1 Region: 14 - 51 Aligned: 38 Modelled: 38 Confidence: 96.9% Identity: 21% Fold: Double-split beta-barrel Superfamily: AbrB/MazE/MraZ-like Family: AbrB N-terminal domain-like Phyre2 PDB 2w1t chain B Region: 14 - 59 Aligned: 46 Modelled: 46 Confidence: 96.8% Identity: 24% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt Phyre2 PDB 2l66 chain B Region: 14 - 47 Aligned: 34 Modelled: 34 Confidence: 96.0% Identity: 15% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. Phyre2 PDB 2ro5 chain B Region: 14 - 52 Aligned: 39 Modelled: 39 Confidence: 95.9% Identity: 28% PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt Phyre2 PDB 2glw chain A Region: 5 - 38 Aligned: 34 Modelled: 34 Confidence: 93.4% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii Phyre2 PDB 3o27 chain B Region: 14 - 43 Aligned: 30 Modelled: 30 Confidence: 93.1% Identity: 17% PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx Phyre2 PDB 2pjh chain B Region: 9 - 43 Aligned: 34 Modelled: 35 Confidence: 83.2% Identity: 24% PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex Phyre2 PDB 1cz5 chain A Region: 9 - 35 Aligned: 26 Modelled: 27 Confidence: 77.2% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) Phyre2 PDB 2d9r chain A domain 1 Region: 2 - 37 Aligned: 36 Modelled: 36 Confidence: 76.0% Identity: 22% Fold: Double-split beta-barrel Superfamily: AF2212/PG0164-like Family: PG0164-like Phyre2 PDB 1cz5 chain A domain 1 Region: 14 - 35 Aligned: 22 Modelled: 22 Confidence: 72.6% Identity: 18% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Cdc48 N-terminal domain-like Phyre2 PDB 1h0h chain A domain 1 Region: 14 - 44 Aligned: 31 Modelled: 31 Confidence: 59.5% Identity: 10% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2jio chain A domain 1 Region: 14 - 44 Aligned: 31 Modelled: 31 Confidence: 59.3% Identity: 16% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 2iv2 chain X domain 1 Region: 8 - 44 Aligned: 37 Modelled: 37 Confidence: 58.9% Identity: 14% Fold: Double psi beta-barrel Superfamily: ADC-like Family: Formate dehydrogenase/DMSO reductase, C-terminal domain Phyre2 PDB 1zq1 chain A domain 1 Region: 18 - 44 Aligned: 27 Modelled: 27 Confidence: 56.5% Identity: 19% Fold: Sm-like fold Superfamily: GatD N-terminal domain-like Family: GatD N-terminal domain-like Phyre2 PDB 1h9m chain B Region: 9 - 43 Aligned: 35 Modelled: 35 Confidence: 55.9% Identity: 29% PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound Phyre2 1 d1ub4c_ 2 d1mvfd_ 3 c3zvkG_ 4 c3tndF_ 5 d1yfba1 6 d2fy9a1 7 c2w1tB_ 8 c2l66B_ 9 c2ro5B_ 10 c2glwA_ 11 c3o27B_ 12 c2pjhB_ 13 c1cz5A_ 14 d2d9ra1 15 d1cz5a1 16 d1h0ha1 17 d2jioa1 18 d2iv2x1 19 d1zq1a1 20 c1h9mB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ub4c_ 99.9 32 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 2 d1mvfd_ 99.6 36 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:Kis/PemI addiction antidote 3 c3zvkG_ 98.6 16 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 4 c3tndF_ 98.2 20 PDB header:translation, toxin Chain: F: PDB Molecule:antitoxin vapb; PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex 5 d1yfba1 97.0 23 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 6 d2fy9a1 96.9 21 Fold:Double-split beta-barrel Superfamily:AbrB/MazE/MraZ-like Family:AbrB N-terminal domain-like 7 c2w1tB_ 96.8 24 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 8 c2l66B_ 96.0 15 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, abrb family; PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea. 9 c2ro5B_ 95.9 28 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt 10 c2glwA_ 93.4 21 PDB header:transcription Chain: A: PDB Molecule:92aa long hypothetical protein; PDBTitle: the solution structure of phs018 from pyrococcus horikoshii 11 c3o27B_ 93.1 17 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 12 c2pjhB_ 83.2 24 PDB header:transport protein Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 13 c1cz5A_ 77.2 23 PDB header:hydrolase Chain: A: PDB Molecule:vcp-like atpase; PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma) 14 d2d9ra1 76.0 22 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 15 d1cz5a1 72.6 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 16 d1h0ha1 59.5 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 17 d2jioa1 59.3 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 18 d2iv2x1 58.9 14 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 19 d1zq1a1 56.5 19 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 20 c1h9mB_ 55.9 29 PDB header:binding protein Chain: B: PDB Molecule:molybdenum-binding-protein; PDBTitle: two crystal structures of the cytoplasmic molybdate-binding2 protein modg suggest a novel cooperative binding mechanism3 and provide insights into ligand-binding specificity.4 peg-grown form with molybdate bound 21 d1vlfm1 not modelled 52.8 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 22 d2vbua1 not modelled 52.3 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:CTP-dependent riboflavin kinase-like 23 d1g8ka1 not modelled 52.1 16 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 24 d1e32a1 not modelled 51.7 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 25 d3d31a1 not modelled 46.4 19 Fold:OB-fold Superfamily:MOP-like Family:ABC-transporter additional domain 26 d1tmoa1 not modelled 45.3 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 27 d1eu1a1 not modelled 45.1 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 28 d1ogya1 not modelled 44.1 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 29 d1kqfa1 not modelled 43.9 9 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 30 c2ki8A_ not modelled 43.5 19 PDB header:oxidoreductase Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase, PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7 31 d1h9ma1 not modelled 42.7 26 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 32 c2iv2X_ not modelled 42.4 14 PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli 33 c1wlfA_ not modelled 41.9 23 PDB header:protein transport Chain: A: PDB Molecule:peroxisome biogenesis factor 1; PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain 34 d1h9ma2 not modelled 38.6 29 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 35 d1dmra1 not modelled 38.4 10 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 36 d1y5ia1 not modelled 37.3 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 37 d1fr3a_ not modelled 36.6 24 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 38 c2v45A_ not modelled 33.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand 39 c2k5lA_ not modelled 33.1 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17 40 d1wlfa2 not modelled 28.3 23 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 41 c1g8jC_ not modelled 27.9 15 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 42 d1guta_ not modelled 27.4 23 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 43 d1h9ra1 not modelled 27.0 17 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 44 d2d6fa1 not modelled 26.0 8 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 45 c2nyaF_ not modelled 25.2 19 PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli 46 c3cf1C_ not modelled 24.6 24 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx 47 c1vlfQ_ not modelled 23.6 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene 48 c2e7zA_ not modelled 23.6 16 PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus 49 d1ylea1 not modelled 23.1 18 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:AstA-like 50 c1kqgA_ not modelled 22.8 10 PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli 51 c1qw1A_ not modelled 22.6 17 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: solution structure of the c-terminal domain of dtxr2 residues 110-226 52 c3d31B_ not modelled 22.3 19 PDB header:transport protein Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding PDBTitle: modbc from methanosarcina acetivorans 53 c2k5hA_ not modelled 21.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 54 c1eu1A_ not modelled 21.7 10 PDB header:oxidoreductase Chain: A: PDB Molecule:dimethyl sulfoxide reductase; PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments. 55 c2he4A_ not modelled 21.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif 56 c1tmoA_ not modelled 20.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia 57 c3qglD_ not modelled 20.6 16 PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3 58 c1y5iA_ not modelled 20.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain; PDBTitle: the crystal structure of the narghi mutant nari-k86a 59 c1h0hA_ not modelled 20.4 10 PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas 60 c1s3sA_ not modelled 19.5 19 PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c 61 c1ogyA_ not modelled 18.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides 62 c1h5nC_ not modelled 18.5 10 PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air 63 c3hu2C_ not modelled 18.3 24 PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97 n-d1 r86a mutant in complex with atpgs 64 c2k4yA_ not modelled 17.2 13 PDB header:metal transport Chain: A: PDB Molecule:feoa-like protein; PDBTitle: nmr structure of feoa-like protein from clostridium2 acetobutylicum: northeast structural genomics consortium3 target car178 65 d1a62a2 not modelled 17.1 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 66 c2jilA_ not modelled 16.8 31 PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor interacting protein-1; PDBTitle: crystal structure of 2nd pdz domain of glutamate receptor2 interacting protein-1 (grip1) 67 c1zeqX_ not modelled 16.4 21 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 68 c2dxbR_ not modelled 16.4 29 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 69 c1uheA_ not modelled 16.2 26 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 70 d2exda1 not modelled 16.2 25 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 71 d2byga1 not modelled 15.4 31 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 72 d1qvpa_ not modelled 14.5 17 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 73 d1qw1a1 not modelled 14.3 18 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:FeoA-like 74 d1v29a_ not modelled 13.6 30 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 75 c2qt7B_ not modelled 13.6 16 PDB header:hydrolase Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like PDBTitle: crystallographic structure of the mature ectodomain of the2 human receptor-type protein-tyrosine phosphatase ia-2 at3 1.30 angstroms 76 c2fugC_ not modelled 13.5 10 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 77 c3idwA_ not modelled 13.5 33 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 78 d2i6va1 not modelled 13.2 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 79 c3pjyB_ not modelled 13.0 22 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 80 c3qyhG_ not modelled 12.9 20 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 81 d2fe5a1 not modelled 12.9 38 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 d2qdya1 not modelled 12.8 20 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 83 c3plxB_ not modelled 12.7 13 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 84 c2ivfA_ not modelled 12.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 85 c1vc3B_ not modelled 12.0 16 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 86 c2c45F_ not modelled 12.0 23 PDB header:lyase Chain: F: PDB Molecule:aspartate 1-decarboxylase precursor; PDBTitle: native precursor of pyruvoyl dependent aspartate2 decarboxylase 87 d1iz6a2 not modelled 11.9 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 88 c2komA_ not modelled 11.5 31 PDB header:signaling protein Chain: A: PDB Molecule:partitioning defective 3 homolog; PDBTitle: solution structure of humar par-3b pdz2 (residues 451-549) 89 d1x5qa1 not modelled 11.3 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 90 d2i4sa1 not modelled 11.3 20 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 91 d2cqaa1 not modelled 11.3 12 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:TIP49 domain 92 c3m7aA_ not modelled 11.2 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of2 unknown function from novosphingobium aromaticivorans dsm3 12444 at 1.22 a resolution 93 c2jxoA_ not modelled 11.1 19 PDB header:protein binding Chain: A: PDB Molecule:ezrin-radixin-moesin-binding phosphoprotein 50; PDBTitle: structure of the second pdz domain of nherf-1 94 c3ougA_ not modelled 11.1 23 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: crystal structure of cleaved l-aspartate-alpha-decarboxylase from2 francisella tularensis 95 d1zoka1 not modelled 11.1 35 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 96 d1dgsa2 not modelled 10.8 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 97 c1pt1B_ not modelled 10.7 6 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 98 d1ppya_ not modelled 10.6 6 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 99 d1yela1 not modelled 10.5 13 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0