Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	W	L	P	L	N	P	I	P	L	K	D	R	V	S	M	I	F	L	Q	Y	G	Q	I	D	V	I	D	G	A	F	V	L	I	D	K	T	G	I	R	T	H	I	P	V	G	S	V	A	C	I	M	L	E	P	G	T	R	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	H	A	A	V	R	L	A	A	Q	V	G	T	L	L	V	W	V	G	E	A	G	V	R	V	Y	A	S	G	Q	P	G	G	A	R	S	D	K	L	L	Y	Q	A	K	L	A	L	D	E	D	L	R	L	K	V	V	R	K	M	F
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	L	R	F	G	E	P	A	P	A	R	R	S	V	E	Q	L	R	G	I	E	G	S	R	V	R	A	T	Y	A	L	L	A	K	Q	Y	G	V	T	W	N	G	R	R	Y	D	P	K	D	W	E	K	G	D	T	I	N	Q	C	I
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?																																?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	A	A	T	S	C	L	Y	G	V	T	E	A	A	I	L	A	A	G	Y	A	P	A	I	G	F	V	H	T	G	K	P	L	S	F	V	Y	D	I	A	D	I	I	K	F	D	T	V	V	P	K	A	F	E	I	A	R	R	N	P
Secondary structure
SS confidence
Disorder																																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	E	P	D	R	E	V	R	L	A	C	R	D	I	F	R	S	S	K	T	L	A	K	L	I	P	L	I	E	D	V	L	A	A	G	E	I	Q	P	P	A	P	P	E	D	A	Q	P	V	A	I	P	L	P	V	S	L	G	D	A
Secondary structure
SS confidence
Disorder		?	?	?	?																														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.
Sequence		G	H	R	S	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3nkd chain B Region: 9 - 280 Aligned: 261 Modelled: 272 Confidence: 100.0% Identity: 99% PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 Phyre2 PDB 3god chain A Region: 5 - 273 Aligned: 264 Modelled: 269 Confidence: 100.0% Identity: 25% PDB header:immune system Chain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense Phyre2 PDB 3lfx chain E Region: 16 - 257 Aligned: 239 Modelled: 242 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima Phyre2 PDB 2yzs chain B Region: 18 - 257 Aligned: 233 Modelled: 240 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 aquifex aeolicus Phyre2 PDB 3pv9 chain D Region: 14 - 244 Aligned: 215 Modelled: 216 Confidence: 100.0% Identity: 17% PDB header:immune system Chain: D: PDB Molecule:putative uncharacterized protein ph1245; PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii Phyre2 PDB 3nke chain A Region: 96 - 280 Aligned: 181 Modelled: 185 Confidence: 100.0% Identity: 99% PDB header:immune system Chain: A: PDB Molecule:protein ygbt; PDBTitle: high resolution structure of the c-terminal domain crisp-associated2 protein cas1 from escherichia coli str. k-12 Phyre2 PDB 1p3d chain A domain 1 Region: 46 - 76 Aligned: 31 Modelled: 31 Confidence: 73.8% Identity: 3% Fold: MurCD N-terminal domain Superfamily: MurCD N-terminal domain Family: MurCD N-terminal domain Phyre2 PDB 2jfg chain A domain 1 Region: 46 - 76 Aligned: 31 Modelled: 31 Confidence: 71.5% Identity: 26% Fold: MurCD N-terminal domain Superfamily: MurCD N-terminal domain Family: MurCD N-terminal domain Phyre2 PDB 1j6u chain A domain 1 Region: 46 - 76 Aligned: 31 Modelled: 31 Confidence: 63.4% Identity: 10% Fold: MurCD N-terminal domain Superfamily: MurCD N-terminal domain Family: MurCD N-terminal domain Phyre2 PDB 2ioj chain A domain 1 Region: 29 - 81 Aligned: 53 Modelled: 53 Confidence: 48.3% Identity: 13% Fold: MurF and HprK N-domain-like Superfamily: HprK N-terminal domain-like Family: DRTGG domain Phyre2 PDB 1jrx chain A Region: 44 - 81 Aligned: 37 Modelled: 38 Confidence: 42.1% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina Phyre2 PDB 3nix chain F Region: 49 - 103 Aligned: 54 Modelled: 55 Confidence: 39.1% Identity: 20% PDB header:oxidoreductase Chain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43. Phyre2 PDB 2hbp chain A Region: 20 - 50 Aligned: 31 Modelled: 31 Confidence: 37.0% Identity: 13% PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 Phyre2 PDB 3lhl chain A Region: 52 - 81 Aligned: 30 Modelled: 30 Confidence: 33.6% Identity: 7% PDB header:hydrolase Chain: A: PDB Molecule:putative agmatinase; PDBTitle: crystal structure of a putative agmatinase from clostridium difficile Phyre2 PDB 1qo8 chain A Region: 44 - 81 Aligned: 37 Modelled: 38 Confidence: 33.3% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase Phyre2 PDB 2acz chain A Region: 43 - 82 Aligned: 39 Modelled: 40 Confidence: 27.2% Identity: 18% PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site Phyre2 PDB 2f00 chain A Region: 45 - 76 Aligned: 32 Modelled: 32 Confidence: 26.7% Identity: 6% PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc Phyre2 PDB 1woh chain A Region: 52 - 82 Aligned: 31 Modelled: 31 Confidence: 26.6% Identity: 19% Fold: Arginase/deacetylase Superfamily: Arginase/deacetylase Family: Arginase-like amidino hydrolases Phyre2 PDB 3mlq chain H Region: 28 - 52 Aligned: 25 Modelled: 25 Confidence: 22.8% Identity: 20% PDB header:transferase/transcription Chain: H: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain Phyre2 PDB 1yq4 chain A Region: 42 - 82 Aligned: 40 Modelled: 41 Confidence: 21.6% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone Phyre2 1 c3nkdB_ 2 c3godA_ 3 c3lfxE_ 4 c2yzsB_ 5 c3pv9D_ 6 c3nkeA_ 7 d1p3da1 8 d2jfga1 9 d1j6ua1 10 d2ioja1 11 c1jrxA_ 12 c3nixF_ 13 c2hbpA_ 14 c3lhlA_ 15 c1qo8A_ 16 c2aczA_ 17 c2f00A_ 18 d1woha_ 19 c3mlqH_ 20 c1yq4A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3nkdB_ 100.0 99 PDB header:immune system Chain: B: PDB Molecule:crispr-associated protein cas1; PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12 2 c3godA_ 100.0 25 PDB header:immune system Chain: A: PDB Molecule:cas1; PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense 3 c3lfxE_ 100.0 18 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima 4 c2yzsB_ 100.0 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of uncharacterized conserved protein from2 aquifex aeolicus 5 c3pv9D_ 100.0 17 PDB header:immune system Chain: D: PDB Molecule:putative uncharacterized protein ph1245; PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii 6 c3nkeA_ 100.0 99 PDB header:immune system Chain: A: PDB Molecule:protein ygbt; PDBTitle: high resolution structure of the c-terminal domain crisp-associated2 protein cas1 from escherichia coli str. k-12 7 d1p3da1 73.8 3 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 8 d2jfga1 71.5 26 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 9 d1j6ua1 63.4 10 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 10 d2ioja1 48.3 13 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 11 c1jrxA_ 42.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c; PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina 12 c3nixF_ 39.1 20 PDB header:oxidoreductase Chain: F: PDB Molecule:flavoprotein/dehydrogenase; PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43. 13 c2hbpA_ 37.0 13 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 14 c3lhlA_ 33.6 7 PDB header:hydrolase Chain: A: PDB Molecule:putative agmatinase; PDBTitle: crystal structure of a putative agmatinase from clostridium difficile 15 c1qo8A_ 33.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 16 c2aczA_ 27.2 18 PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site 17 c2f00A_ 26.7 6 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 18 d1woha_ 26.6 19 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 19 c3mlqH_ 22.8 20 PDB header:transferase/transcription Chain: H: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 20 c1yq4A_ 21.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone 21 c3nipB_ not modelled 20.6 10 PDB header:hydrolase Chain: B: PDB Molecule:3-guanidinopropionase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane 22 c3m1rF_ not modelled 20.1 17 PDB header:hydrolase Chain: F: PDB Molecule:formimidoylglutamase; PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168 23 c3ff4A_ not modelled 19.8 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein chu_1412 24 d1neka2 not modelled 19.6 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain 25 d2aeba1 not modelled 19.6 13 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 26 d1xfka_ not modelled 18.5 23 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 27 d2d59a1 not modelled 18.5 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 28 d1gq6a_ not modelled 18.4 23 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 29 c1jqoA_ not modelled 18.3 20 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 30 d1jqoa_ not modelled 18.3 20 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 31 d1pq3a_ not modelled 17.6 17 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 32 d1zhva2 not modelled 17.2 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 33 c1d4cB_ not modelled 16.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:flavocytochrome c fumarate reductase; PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1 34 c2cunA_ not modelled 16.5 13 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 35 c3bioB_ not modelled 15.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83 36 c1j6uA_ not modelled 15.0 9 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution 37 c3ihgA_ not modelled 15.0 21 PDB header:flavoprotein, oxidoreductase Chain: A: PDB Molecule:rdme; PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone 38 c2e1mA_ not modelled 15.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 39 d2q4qa1 not modelled 14.3 16 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 40 d1w4xa1 not modelled 13.8 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 41 d1cr6a2 not modelled 13.7 16 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase 42 d2a0ma1 not modelled 13.3 13 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 43 d1vpea_ not modelled 13.0 15 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 44 d1ko7a1 not modelled 12.9 15 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 45 d2ceva_ not modelled 12.9 13 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 46 d2ooxe2 not modelled 12.8 14 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 47 c3mlqE_ not modelled 12.8 26 PDB header:transferase/transcription Chain: E: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 48 c2eivH_ not modelled 12.7 30 PDB header:hydrolase Chain: H: PDB Molecule:arginase; PDBTitle: crystal structure of the arginase from thermus thermophilus 49 d2fvta1 not modelled 12.6 13 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 50 c2kbrA_ not modelled 12.5 8 PDB header:structural protein/cell adhesion Chain: A: PDB Molecule:harmonin; PDBTitle: solution structure of harmonin n terminal domain in complex2 with a internal peptide of cadherin23 51 d1iuka_ not modelled 12.5 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 52 d1v6sa_ not modelled 12.5 22 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 53 c2pd2A_ not modelled 12.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 54 d1phpa_ not modelled 12.1 15 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 55 d1gsoa2 not modelled 12.0 10 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 56 d1ybha1 not modelled 12.0 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 57 d1zvpa2 not modelled 11.8 13 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 58 d1zd3a2 not modelled 11.7 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Epoxide hydrolase 59 c3do5A_ not modelled 11.5 18 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution 60 d1d3va_ not modelled 11.3 13 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Arginase-like amidino hydrolases 61 c3mmrA_ not modelled 11.1 13 PDB header:hydrolase Chain: A: PDB Molecule:arginase; PDBTitle: structure of plasmodium falciparum arginase in complex with abh 62 c3cpiH_ not modelled 11.1 14 PDB header:protein transport Chain: H: PDB Molecule:rab gdp-dissociation inhibitor; PDBTitle: crystal structure of yeast rab-gdi 63 c2qa2A_ not modelled 10.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:polyketide oxygenase cabe; PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution 64 c1zmrA_ not modelled 10.9 20 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 65 c1s1hB_ not modelled 10.8 12 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 66 c2duwA_ not modelled 10.7 11 PDB header:ligand binding protein Chain: A: PDB Molecule:putative coa-binding protein; PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae 67 d2eyqa1 not modelled 10.6 20 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 68 d2gf3a1 not modelled 10.4 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 69 c2dkhA_ not modelled 10.4 18 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase; PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate 70 d2fi9a1 not modelled 10.2 9 Fold:MTH938-like Superfamily:MTH938-like Family:MTH938-like 71 c3pzlA_ not modelled 10.1 27 PDB header:hydrolase Chain: A: PDB Molecule:agmatine ureohydrolase; PDBTitle: the crystal structure of agmatine ureohydrolase of thermoplasma2 volcanium 72 d2nmla1 not modelled 10.1 24 Fold:ERH-like Superfamily:ERH-like Family:ERH-like 73 c3q3vA_ not modelled 9.8 14 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni. 74 c2r4jA_ not modelled 9.8 17 PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap 75 c3fwzA_ not modelled 9.7 16 PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli 76 c3nioF_ not modelled 9.6 21 PDB header:hydrolase Chain: F: PDB Molecule:guanidinobutyrase; PDBTitle: crystal structure of pseudomonas aeruginosa guanidinobutyrase 77 d1otha2 not modelled 9.5 19 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 78 d2bcgg1 not modelled 9.2 14 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 79 d1euca1 not modelled 9.1 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 80 c2yg4B_ not modelled 9.0 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine 81 c1oy5B_ not modelled 8.7 16 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 82 d1oy5a_ not modelled 8.7 16 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 83 c3mpoD_ not modelled 8.7 24 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 84 c2rgoA_ not modelled 8.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:alpha-glycerophosphate oxidase; PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase 85 d1y81a1 not modelled 8.5 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 86 c2p58A_ not modelled 8.4 15 PDB header:transport protein/chaperone Chain: A: PDB Molecule:putative type iii secretion protein ysce; PDBTitle: structure of the yersinia pestis type iii secretion system2 needle protein yscf in complex with its chaperones3 ysce/yscg 87 c3fmwC_ not modelled 8.3 9 PDB header:oxidoreductase Chain: C: PDB Molecule:oxygenase; PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus. 88 d2ozga1 not modelled 8.3 13 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 89 c3nyeA_ not modelled 8.3 14 PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine 90 d1zcza2 not modelled 8.2 12 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 91 c1zvpB_ not modelled 8.1 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein vc0802; PDBTitle: crystal structure of a protein of unknown function vc0802 from vibrio2 cholerae, possible transport protein 92 c2l2qA_ not modelled 8.1 15 PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi 93 d3coxa1 not modelled 8.1 26 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 94 c2d6fA_ not modelled 7.9 20 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 95 d1rlga_ not modelled 7.9 9 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 96 d2cvza1 not modelled 7.8 22 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 97 d2npta1 not modelled 7.7 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 98 c3l78A_ not modelled 7.6 9 PDB header:transcription Chain: A: PDB Molecule:regulatory protein spx; PDBTitle: the crystal structure of smu.1142c from streptococcus mutans ua159 99 c3nbmA_ not modelled 7.5 24 PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0