Phyre 2 alignment of Q46896 with c3mlqH_

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Job Description | Q46896
Confidence | 22.84% | Date | Thu Jan 5 12:35:36 GMT 2012
Rank | 19 | Aligned Residues | 25
% Identity | 20% | Template | c3mlqH_
PDB info | PDB header:transferase/transcription | Chain: H: PDB Molecule:transcription-repair coupling factor; | PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
Resolution | 2.91 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | .
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Query Sequence |  | I | D | G | A | F | V | L | I | D | K | T | G | I | R | T | H | I | P | V | G | S | V | A | C | I
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Template Sequence |  | K | R | D | Y | L | V | L | R | Y | K | G | E | G | K | L | Y | L | P | V | E | Q | L | P | L | L
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  | S |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 347 | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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