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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: d1oy5a_

Fold library idFoldSuperfamilyFamily
d1oy5a_alpha/beta knotalpha/beta knottRNA(m1G37)-methyltransferase TrmD


Added to library: Tue Mar 16 13:03:49 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NPLRFFVLTIFPHIISCYSEYGIVKQAIKKGKVEVYPIDLREFAPKGQVDDVPYGGLPGMVLKPEPIYEA
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Known secondary structure (DSSP)

S
TTSTSGGGG
TTS



SS

SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence YDYVVENYGKPFVLITEPWGEKLNQKLVNELSKKERIMIICGRYEGVDERVKKIVDMEISLGDFILSGGE
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Known secondary structure (DSSP)



TTB



T
S
BTT
B
GGGGGG



B
SS

SBS
 .........150.........160.........170.........180.........190.........200.........210
Sequence IVALAVIDAVSRVLPGVLSEPYPVYTRPREYRGMKVPEELLSGHHKLIELWKLWHRIENTVKKRPDLIPK
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Known secondary structure (DSSP) TSTTTSS






S
STT

GGGTS
SSSTTTTTTGGGS
SS
STT
 ........
Sequence DLTELEKD
Predicted secondary structure



SS confidence







Known secondary structure (DSSP) GGGTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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