Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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Sequence

M

D

T

I

D

L

G

N

N

E

S

L

V

Y

G

V

F

P

N

Q

D

G

T

F

T

A

M

T

Y

T

K

S

K

T

F

K

T

E

N

G

A

R

R

W

L

E

R

N

S

G

E

Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bl4 chain B Region: 31 - 46 Aligned: 16 Modelled: 16 Confidence: 18.3% Identity: 38% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (arth_0117) from2 arthrobacter sp. fb24 at 2.20 a resolution Phyre2 PDB 1exu chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 13.8% Identity: 40% PDB header:immune system Chain: A: PDB Molecule:igg receptor fcrn large subunit p51; PDBTitle: crystal structure of the human mhc-related fc receptor Phyre2 PDB 1psv chain A Region: 31 - 50 Aligned: 20 Modelled: 20 Confidence: 13.3% Identity: 40% PDB header:designed peptide Chain: A: PDB Molecule:pda8d; PDBTitle: computationally designed peptide with a beta-beta-alpha2 fold selection, nmr, 32 structures Phyre2 PDB 3of6 chain D Region: 10 - 27 Aligned: 18 Modelled: 18 Confidence: 12.6% Identity: 39% PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure Phyre2 PDB 1de4 chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 11.6% Identity: 40% PDB header:metal transport inhibitor/receptor Chain: A: PDB Molecule:hemochromatosis protein; PDBTitle: hemochromatosis protein hfe complexed with transferrin receptor Phyre2 PDB 1fme chain A Region: 31 - 50 Aligned: 20 Modelled: 20 Confidence: 11.6% Identity: 35% PDB header:de novo protein Chain: A: PDB Molecule:fsd-ey peptide; PDBTitle: solution structure of fsd-ey, a novel peptide assuming a2 beta-beta-alpha fold Phyre2 PDB 1s9v chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 11.5% Identity: 20% PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3) PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide Phyre2 PDB 1fsd chain A Region: 31 - 50 Aligned: 20 Modelled: 20 Confidence: 11.1% Identity: 35% PDB header:novel sequence Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif; PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, 41 structures Phyre2 PDB 1fsv chain A Region: 31 - 50 Aligned: 20 Modelled: 20 Confidence: 11.1% Identity: 35% PDB header:beta beta alpha motif Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif; PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, minimized average structure Phyre2 PDB 3jvg chain B Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 10.9% Identity: 33% PDB header:immune system Chain: B: PDB Molecule:t-cell surface glycoprotein cd1a1 antigen; PDBTitle: crystal structure of chicken cd1-1 Phyre2 PDB 3bew chain D Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 10.0% Identity: 40% PDB header:immune system Chain: D: PDB Molecule:major histocompatibility complex class i PDBTitle: 10mer crystal structure of chicken mhc class i haplotype b21 Phyre2 PDB 1nez chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 9.8% Identity: 33% PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, tla(c) alpha chain; PDBTitle: the crystal structure of a tl/cd8aa complex at 2.1a2 resolution:implications for memory t cell generation, co-receptor3 preference and affinity Phyre2 PDB 1xgs chain A domain 1 Region: 32 - 51 Aligned: 20 Modelled: 20 Confidence: 9.7% Identity: 30% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Methionine aminopeptidase, insert domain Phyre2 PDB 1f3j chain D Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 9.6% Identity: 27% PDB header:immune system Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen; PDBTitle: histocompatibility antigen i-ag7 Phyre2 PDB 3lqz chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 9.6% Identity: 27% PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain; PDBTitle: crystal structure of hla-dp2 Phyre2 PDB 2q6w chain D Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 9.5% Identity: 27% PDB header:immune system Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia Phyre2 PDB 2p24 chain B Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 9.1% Identity: 27% PDB header:immune system Chain: B: PDB Molecule:h-2 class ii histocompatibility antigen, a-u beta chain; PDBTitle: i-au/mbp125-135 Phyre2 PDB 1mhc chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 9.0% Identity: 33% PDB header:histocompatibility antigen/peptide Chain: A: PDB Molecule:mhc class i antigen h2-m3; PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution Phyre2 PDB 3fon chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 8.9% Identity: 33% PDB header:immune system Chain: A: PDB Molecule:mhc; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai Phyre2 PDB 1leg chain A Region: 15 - 29 Aligned: 15 Modelled: 15 Confidence: 8.8% Identity: 33% PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb bound to the dev8 peptide Phyre2 1 c3bl4B_ 2 c1exuA_ 3 c1psvA_ 4 c3of6D_ 5 c1de4A_ 6 c1fmeA_ 7 c1s9vA_ 8 c1fsdA_ 9 c1fsvA_ 10 c3jvgB_ 11 c3bewD_ 12 c1nezA_ 13 d1xgsa1 14 c1f3jD_ 15 c3lqzA_ 16 c2q6wD_ 17 c2p24B_ 18 c1mhcA_ 19 c3fonA_ 20 c1legA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bl4B_ 18.3 38 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function (arth_0117) from2 arthrobacter sp. fb24 at 2.20 a resolution 2 c1exuA_ 13.8 40 PDB header:immune system Chain: A: PDB Molecule:igg receptor fcrn large subunit p51; PDBTitle: crystal structure of the human mhc-related fc receptor 3 c1psvA_ 13.3 40 PDB header:designed peptide Chain: A: PDB Molecule:pda8d; PDBTitle: computationally designed peptide with a beta-beta-alpha2 fold selection, nmr, 32 structures 4 c3of6D_ 12.6 39 PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure 5 c1de4A_ 11.6 40 PDB header:metal transport inhibitor/receptor Chain: A: PDB Molecule:hemochromatosis protein; PDBTitle: hemochromatosis protein hfe complexed with transferrin receptor 6 c1fmeA_ 11.6 35 PDB header:de novo protein Chain: A: PDB Molecule:fsd-ey peptide; PDBTitle: solution structure of fsd-ey, a novel peptide assuming a2 beta-beta-alpha fold 7 c1s9vA_ 11.5 20 PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dq(3) PDBTitle: crystal structure of hla-dq2 complexed with deamidated2 gliadin peptide 8 c1fsdA_ 11.1 35 PDB header:novel sequence Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif; PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, 41 structures 9 c1fsvA_ 11.1 35 PDB header:beta beta alpha motif Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif; PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, minimized average structure 10 c3jvgB_ 10.9 33 PDB header:immune system Chain: B: PDB Molecule:t-cell surface glycoprotein cd1a1 antigen; PDBTitle: crystal structure of chicken cd1-1 11 c3bewD_ 10.0 40 PDB header:immune system Chain: D: PDB Molecule:major histocompatibility complex class i PDBTitle: 10mer crystal structure of chicken mhc class i haplotype b21 12 c1nezA_ 9.8 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, tla(c) alpha chain; PDBTitle: the crystal structure of a tl/cd8aa complex at 2.1a2 resolution:implications for memory t cell generation, co-receptor3 preference and affinity 13 d1xgsa1 9.7 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Methionine aminopeptidase, insert domain 14 c1f3jD_ 9.6 27 PDB header:immune system Chain: D: PDB Molecule:h-2 class ii histocompatibility antigen; PDBTitle: histocompatibility antigen i-ag7 15 c3lqzA_ 9.6 27 PDB header:immune system Chain: A: PDB Molecule:hla class ii histocompatibility antigen, dp alpha 1 chain; PDBTitle: crystal structure of hla-dp2 16 c2q6wD_ 9.5 27 PDB header:immune system Chain: D: PDB Molecule:hla class ii histocompatibility antigen, dr PDBTitle: the structure of hla-dra, drb3*0101 (dr52a) with bound2 platelet integrin peptide associated with fetal and3 neonatal alloimmune thrombocytopenia 17 c2p24B_ 9.1 27 PDB header:immune system Chain: B: PDB Molecule:h-2 class ii histocompatibility antigen, a-u beta chain; PDBTitle: i-au/mbp125-135 18 c1mhcA_ 9.0 33 PDB header:histocompatibility antigen/peptide Chain: A: PDB Molecule:mhc class i antigen h2-m3; PDBTitle: model of mhc class i h2-m3 with nonapeptide from rat nd1 refined at2 2.3 angstroms resolution 19 c3fonA_ 8.9 33 PDB header:immune system Chain: A: PDB Molecule:mhc; PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai 20 c1legA_ 8.8 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb bound to the dev8 peptide 21 c2bc4C_ not modelled 8.8 27 PDB header:immune system Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm PDBTitle: crystal structure of hla-dm 22 c1kjmA_ not modelled 8.7 33 PDB header:immune system Chain: A: PDB Molecule:rt1 class i histocompatibility antigen, aa alpha chain, PDBTitle: tap-a-associated rat mhc class i molecule 23 c1pqzA_ not modelled 8.7 17 PDB header:viral protein/immune system Chain: A: PDB Molecule:mcmv m144; PDBTitle: murine cytomegalovirus immunomodulatory protein m144 24 c1i1aA_ not modelled 8.6 40 PDB header:immune system Chain: A: PDB Molecule:neonatal fc receptor a; PDBTitle: crystal structure of the neonatal fc receptor complexed with a2 heterodimeric fc 25 c1fo0H_ not modelled 8.5 33 PDB header:immune system Chain: H: PDB Molecule:protein (allogeneic h-2kb mhc class i molecule); PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule2 complex 26 c2p24A_ not modelled 8.5 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class ii histocompatibility antigen, a-u alpha chain; PDBTitle: i-au/mbp125-135 27 c1p1zA_ not modelled 8.2 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: x-ray crystal structure of the lectin-like natural killer2 cell receptor ly-49c bound to its mhc class i ligand h-2kb 28 c1zhbJ_ not modelled 8.1 33 PDB header:immune system Chain: J: PDB Molecule:h-2 class i histocompatibility antigen, d-b PDBTitle: crystal structure of the murine class i major2 histocompatibility complex of h-2db, b2-microglobulin, and3 a 9-residue peptide derived from rat dopamine beta-4 monooxigenase 29 c2zswA_ not modelled 8.0 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598 30 c2zswG_ not modelled 8.0 33 PDB header:immune system Chain: G: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598 31 c1kj2I_ not modelled 8.0 33 PDB header:immune system Chain: I: PDB Molecule:allogeneic h-2kb mhc class i molecule; PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule complex 32 c2zswE_ not modelled 8.0 33 PDB header:immune system Chain: E: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598 33 c2zswC_ not modelled 8.0 33 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598 34 c1kj3H_ not modelled 7.6 33 PDB header:immune system Chain: H: PDB Molecule:h-2kb mhc class i molecule alpha chain; PDBTitle: mhc class i h-2kb molecule complexed with pkb1 peptide 35 d1khia2 not modelled 7.6 47 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 36 c1t0mD_ not modelled 7.3 33 PDB header:immune system Chain: D: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: conformational switch in polymorphic h-2k molecules2 containing an hsv peptide 37 c1kj3I_ not modelled 7.3 33 PDB header:immune system Chain: I: PDB Molecule:h-2kb mhc class i molecule alpha chain; PDBTitle: mhc class i h-2kb molecule complexed with pkb1 peptide 38 c1t0mA_ not modelled 7.3 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: conformational switch in polymorphic h-2k molecules2 containing an hsv peptide 39 c1nanH_ not modelled 7.3 33 PDB header:immune system Chain: H: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide 40 c2zsvC_ not modelled 7.3 33 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kb in complex with jhmv epitope s598 41 c1nanL_ not modelled 7.3 33 PDB header:immune system Chain: L: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: mch class i h-2kb molecule complexed with pbm1 peptide 42 c3bsuF_ not modelled 7.3 33 PDB header:hydrolase/rna/dna Chain: F: PDB Molecule:ribonuclease h1; PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna 43 c1qo3A_ not modelled 7.1 33 PDB header:receptor/immune system Chain: A: PDB Molecule:mhc class i h-2dd heavy chain; PDBTitle: complex between nk cell receptor ly49a and its mhc class i2 ligand h-2dd 44 c1k5hB_ not modelled 7.1 62 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase 45 c2k6rA_ not modelled 7.0 35 PDB header:de novo protein Chain: A: PDB Molecule:full sequence design 1 synthetic superstable; PDBTitle: protein folding on a highly rugged landscape: experimental2 observation of glassy dynamics and structural frustration 46 c1n59C_ not modelled 7.0 33 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2kb, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv 47 c1n59A_ not modelled 7.0 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of the murine class i major histocompatibility2 complex of h-2kb, b2-microglobulin, and a 9-residue immunodominant3 peptide epitope gp33 derived from lcmv 48 c1s7sA_ not modelled 7.0 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structures of the murine class i major histocompatibility2 complex h-2kb in complex with lcmv-derived gp33 index peptide and3 three of its escape variants 49 c1kj2H_ not modelled 7.0 33 PDB header:immune system Chain: H: PDB Molecule:allogeneic h-2kb mhc class i molecule; PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule complex 50 c3ml6D_ not modelled 7.0 35 PDB header:protein transport Chain: D: PDB Molecule:chimeric complex between protein dishevlled2 homolog dvl-2 PDBTitle: a complex between dishevlled2 and clathrin adaptor ap-2 51 c3ujhB_ not modelled 6.7 35 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii 52 c1lekA_ not modelled 6.7 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of h-2kbm3 bound to dev8 53 c3bzeA_ not modelled 6.6 33 PDB header:immune system Chain: A: PDB Molecule:hla class i histocompatibility antigen, alpha chain e; PDBTitle: the human non-classical major histocompatibility complex molecule hla-2 e 54 c3hjbA_ not modelled 6.6 45 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. 55 d2i3ca1 not modelled 6.6 25 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:AstE/AspA-like 56 c1ypzA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h2-t22 protein; PDBTitle: immune receptor 57 c3d2uE_ not modelled 6.4 35 PDB header:immune system Chain: E: PDB Molecule:ul18 protein; PDBTitle: structure of ul18, a peptide-binding viral mhc mimic, bound to a host2 inhibitory receptor 58 c2fo4A_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: enhanced mhc class i binding and immune responses through anchor2 modification of the non-canonical tumor associated muc1-8 peptide 59 c1g7pA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of mhc class i h-2kb heavy chain complexed with2 beta-2 microglobulin and yeast alpha-glucosidase 60 c1g6rI_ not modelled 6.4 33 PDB header:immune system Chain: I: PDB Molecule:major histocompatibility complex class i PDBTitle: a functional hot spot for antigen recognition in a2 superagonist tcr/mhc complex 61 c2ckbI_ not modelled 6.4 33 PDB header:major histocompatibility complex Chain: I: PDB Molecule:major histocompatibility complex class i PDBTitle: structure of the 2c/kb/dev8 complex 62 c1kpvA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: high resolution crystal structure of the mhc class i complex h-2 2kb/sev9 63 c3cvhA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: how tcr-like antibody recognizes mhc-bound peptide 64 c2vabA_ not modelled 6.4 33 PDB header:complex (mhc i/peptide) Chain: A: PDB Molecule:mhc class i h-2kb heavy chain; PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and sendai virus nucleoprotein 65 c2vaaA_ not modelled 6.4 33 PDB header:complex (mhc i/peptide) Chain: A: PDB Molecule:mhc class i h-2kb heavy chain; PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and vesicular stomatitis virus nucleoprotein 66 c1g6rH_ not modelled 6.4 33 PDB header:immune system Chain: H: PDB Molecule:major histocompatibility complex class i PDBTitle: a functional hot spot for antigen recognition in a2 superagonist tcr/mhc complex 67 c3c8kA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: the crystal structure of ly49c bound to h-2kb 68 c1g7qA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: crystal structure of mhc class i h-2kb heavy chain complexed with2 beta-2 microglobulin and muc1 vntr peptide sapdtrpa 69 c1rk1A_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: mhc class i natural h-2kb heavy chain complexed with beta-22 microglobulin and herpes simplex virus mutant glycoprotein b peptide 70 c1bqhA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:protein (h-2 class i histocompatibility antigen); PDBTitle: murine cd8aa ectodomain fragment in complex with h-2kb/vsv8 71 c1kpuA_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: high resolution crystal structure of the mhc class i complex h-2 2kb/vsv8 72 c1wbzC_ not modelled 6.4 33 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: crystal structures of murine mhc class i h-2 db and kb2 molecules in complex with ctl epitopes from influenza a3 virus: implications for tcr repertoire selection and4 immunodominance 73 c2ckbH_ not modelled 6.4 33 PDB header:major histocompatibility complex Chain: H: PDB Molecule:major histocompatibility complex class i PDBTitle: structure of the 2c/kb/dev8 complex 74 c1kbgH_ not modelled 6.4 33 PDB header:immune system Chain: H: PDB Molecule:protein (major histocompatibility complex class i antigen PDBTitle: mhc class i h-2kb presented glycopeptide rgy8-6h-gal2 75 c1rk0A_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and herpes simplex virus glycoprotein b3 peptide 76 c1vadA_ not modelled 6.4 33 PDB header:complex (mhc i/peptide) Chain: A: PDB Molecule:mhc class i h-2kb heavy chain; PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and yeast alpha-glucosidase 77 c1oszA_ not modelled 6.4 33 PDB header:complex (mhc i/peptide) Chain: A: PDB Molecule:mhc class i h-2kb heavy chain; PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and an (l4v) mutant of the vesicular3 stomatitis virus nucleoprotein 78 c3cvhM_ not modelled 6.4 33 PDB header:immune system Chain: M: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: how tcr-like antibody recognizes mhc-bound peptide 79 c1lk2A_ not modelled 6.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: 1.35a crystal structure of h-2kb complexed with the gnysfyal peptide 80 c1vacA_ not modelled 6.4 33 PDB header:complex (mhc i/peptide) Chain: A: PDB Molecule:mhc class i h-2kb heavy chain; PDBTitle: mhc class i h-2kb heavy chain complexed with beta-22 microglobulin and chicken ovalbumin 81 c1bqhD_ not modelled 6.4 33 PDB header:immune system Chain: D: PDB Molecule:protein (h-2 class i histocompatibility antigen); PDBTitle: murine cd8aa ectodomain fragment in complex with h-2kb/vsv8 82 c1zs8C_ not modelled 6.2 33 PDB header:immune system Chain: C: PDB Molecule:histocompatibility 2, m region locus 10.5; PDBTitle: crystal structure of the murine mhc class ib molecule m10.5 83 c1zt7C_ not modelled 5.9 33 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-k PDBTitle: crystal structure of class i mhc h-2kk in complex with a2 nonapeptide 84 c3nbuC_ not modelled 5.9 55 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 85 c3rgvC_ not modelled 5.9 33 PDB header:immune system Chain: C: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain; PDBTitle: a single tcr bound to mhci and mhc ii reveals switchable tcr2 conformers 86 c1i7rA_ not modelled 5.8 33 PDB header:immune system Chain: A: PDB Molecule:hla class i histocompatibility antigen, a-2 PDBTitle: crystal structure of class i mhc a2 in complex with peptide2 p1058 87 c3p73A_ not modelled 5.8 47 PDB header:immune system Chain: A: PDB Molecule:mhc rfp-y class i alpha chain; PDBTitle: crystal structures of the chicken yf1*7.1 molecule 88 c2clvA_ not modelled 5.7 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: mhc class i natural mutant h-2kbm8 heavy chain complexed2 with beta-2 microglobulin and pbm8 peptide 89 d1iata_ not modelled 5.6 35 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 90 d2dgxa1 not modelled 5.6 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 c1p4lA_ not modelled 5.6 33 PDB header:immune system Chain: A: PDB Molecule:mhc class i h-2kb heavy chain; PDBTitle: crystal structure of nk receptor ly49c mutant with its mhc2 class i ligand h-2kb 92 c3au9A_ not modelled 5.5 38 PDB header:isomerase/isomerase inhibitor Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of the quaternary complex-1 of an isomerase 93 c3ljkA_ not modelled 5.5 45 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 94 c1gzpA_ not modelled 5.4 20 PDB header:glycoprotein Chain: A: PDB Molecule:t-cell surface glycoprotein cd1b; PDBTitle: cd1b in complex with gm2 ganglioside 95 c1namH_ not modelled 5.4 33 PDB header:immune system Chain: H: PDB Molecule:h-2 class i histocompatibility antigen, k-b alpha chain PDBTitle: murine alloreactive scfv tcr-peptide-mhc class i molecule complex 96 c1wbzA_ not modelled 5.4 33 PDB header:immune system Chain: A: PDB Molecule:h-2 class i histocompatibility antigen, k-b PDBTitle: crystal structures of murine mhc class i h-2 db and kb2 molecules in complex with ctl epitopes from influenza a3 virus: implications for tcr repertoire selection and4 immunodominance 97 c1mwaH_ not modelled 5.3 33 PDB header:immune system Chain: H: PDB Molecule:h-2kbm3 mhc class i molecule heavy chain; PDBTitle: 2c/h-2kbm3/dev8 allogeneic complex 98 c1mwaI_ not modelled 5.3 33 PDB header:immune system Chain: I: PDB Molecule:h-2kbm3 mhc class i molecule heavy chain; PDBTitle: 2c/h-2kbm3/dev8 allogeneic complex 99 d1tf3a2 not modelled 5.2 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0