PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1nezA_

Fold library id	PDB Header	Molecule	Title
c1nezA_	PDB header: immune system	Chain: A: PDB Molecule: h-2 class i histocompatibility antigen, tla(c)	PDBTitle: the crystal structure of a tl/cd8aa complex at 2.1a2 resolution:implications for memory t cell generation, co-3 receptor preference and affinity

Links to external resources
Added to library: Tue Mar 16 13:06:32 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S H S L R Y F Y T A L S R P A I S E P W Y I A V G Y L D D T Q F A R F D S A G E T G T Y K L S A P W V E Q E G P E Y W A R E T E I V T S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Q F F R E N L Q T M L D Y Y N L S Q N G S H T I Q V M Y G C E V E F F G S L F R A Y E Q H G Y D G Q D Y I A L N E D L K T W T A A D M A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S S
T T T T T T
T T S S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E I T R S K W E Q A G Y T E L R R T Y L E G P C K D S L L R Y L E N R K K T Q E C T D P P K T H V T H H A R P E G D V T L R C W A L G F Y P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
B
T T S S B S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . .

Sequence A H I T L T W Q L N G E E L I Q D T E L V E T R P A G D G T F Q K W A A V V V P S G E E Q K Y T C H V Y H E G L P E P L T L R W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T T S
S S S
T T
G G G
T T S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	H	S	L	R	Y	F	Y	T	A	L	S	R	P	A	I	S	E	P	W	Y	I	A	V	G	Y	L	D	D	T	Q	F	A	R	F	D	S	A	G	E	T	G	T	Y	K	L	S	A	P	W	V	E	Q	E	G	P	E	Y	W	A	R	E	T	E	I	V	T	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S												T	T								S	T	T	T	T												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Q	F	F	R	E	N	L	Q	T	M	L	D	Y	Y	N	L	S	Q	N	G	S	H	T	I	Q	V	M	Y	G	C	E	V	E	F	F	G	S	L	F	R	A	Y	E	Q	H	G	Y	D	G	Q	D	Y	I	A	L	N	E	D	L	K	T	W	T	A	A	D	M	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T								T	T			S	S	S														T	T	T	T											T	T								T	T	S	S					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	I	T	R	S	K	W	E	Q	A	G	Y	T	E	L	R	R	T	Y	L	E	G	P	C	K	D	S	L	L	R	Y	L	E	N	R	K	K	T	Q	E	C	T	D	P	P	K	T	H	V	T	H	H	A	R	P	E	G	D	V	T	L	R	C	W	A	L	G	F	Y	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T											T																	S		S		B												T	T	S	S											B	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Sequence	A	H	I	T	L	T	W	Q	L	N	G	E	E	L	I	Q	D	T	E	L	V	E	T	R	P	A	G	D	G	T	F	Q	K	W	A	A	V	V	V	P	S	G	E	E	Q	K	Y	T	C	H	V	Y	H	E	G	L	P	E	P	L	T	L	R	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S									T	T				T	T	S										S	S	S												T	T		G	G	G								T	T	S	S	S