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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1gzpA_

Fold library idPDB HeaderMoleculeTitle
c1gzpA_PDB header: glycoproteinChain: A: PDB Molecule: t-cell surface glycoprotein cd1b;PDBTitle: cd1b in complex with gm2 ganglioside


Added to library: Tue Mar 16 13:11:11 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDSDSGTAIFLKPWSKGNFSDKEVAELEEIFRVY
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Known secondary structure (DSSP)

S

TTTTTTTT
STTTTTT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IFGFAREVQDFAGDFQMKYPFEIQGIAGCELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQK
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Known secondary structure (DSSP) STTTTT

SS
TTS
TTTT
TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FCALIIQYQGIMETVRILLYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYP
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Known secondary structure (DSSP) TT
TTT

B




SSTTS
BS
 .........220.........230.........240.........250.........260.........270......
Sequence KPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWGP
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Known secondary structure (DSSP) S
TT
TT



TTTGGGGTT
TTTTT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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