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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1kjmA_

Fold library idPDB HeaderMoleculeTitle
c1kjmA_PDB header: immune systemChain: A: PDB Molecule: rt1 class i histocompatibility antigen, aa alphaPDBTitle: tap-a-associated rat mhc class i molecule


Added to library: Tue Mar 16 12:44:15 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSHSLRYFYTAVSRPGLGEPRFIAVGYVDDTEFVRFDSDAENPRMEPRARWMEREGPEYWEQQTRIAKEW
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Known secondary structure (DSSP)


TTSSS
TTTTSSS



SGGGTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EQIYRVDLRTLRGYYNQSEGGSHTIQEMYGCDVGSDGSLLRGYRQDAYDGRDYIALNEDLKTWTAADFAA
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Known secondary structure (DSSP) TT

TT


TTS
TT
TTSS
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QITRNKWERARYAERLRAYLEGTCVEWLSRYLELGKETLLRSDPPEAHVTLHPRPEGDVTLRCWALGFYP
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Known secondary structure (DSSP) TTTTT

B


TTSSBS
 .........220.........230.........240.........250.........260.........270.......
Sequence ADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVEHEGLPKPLSQRWEPL
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Known secondary structure (DSSP) S

TT

TT




SSS

TT
GGG
TT
SS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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