Email l.a.kelley@imperial.ac.uk Description P24216 Date Thu Jan 5 11:41:19 GMT 2012 Unique Job ID 881f53d646e6c06b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gk4A_ 89.0 13 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 2 c1x8yA_ 84.0 7 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 3 d1ucua_ 80.9 11 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 4 c3movB_ 78.0 9 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of human lamin-b1 coil 2 segment 5 c1ei3E_ 77.7 12 PDB header: PDB COMPND: 6 c1ik9B_ 73.2 11 PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 7 c2pnvA_ 69.8 19 PDB header:membrane protein Chain: A: PDB Molecule:small conductance calcium-activated potassium PDBTitle: crystal structure of the leucine zipper domain of small-2 conductance ca2+-activated k+ (skca) channel from rattus3 norvegicus 8 c1ei3C_ 63.0 13 PDB header: PDB COMPND: 9 c2d4yA_ 61.7 10 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 10 c2zdiA_ 55.6 11 PDB header:chaperone Chain: A: PDB Molecule:prefoldin subunit beta; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 11 d1fxka_ 52.8 15 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 12 c1sfcD_ 52.4 8 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 13 c1deqO_ 48.8 12 PDB header: PDB COMPND: 14 c1l4aD_ 47.5 10 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 15 c3ojaA_ 45.0 7 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 16 c3ghgD_ 44.2 11 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 17 c2gr7C_ 43.4 18 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 18 d2gr7a1 43.4 18 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 19 c3ghgK_ 43.0 9 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 20 c3swyB_ 42.9 14 PDB header:transport protein Chain: B: PDB Molecule:cyclic nucleotide-gated cation channel alpha-3; PDBTitle: cnga3 626-672 containing clz domain 21 c1deqF_ not modelled 42.3 8 PDB header: PDB COMPND: 22 c1kzzA_ not modelled 37.0 12 PDB header:signaling protein Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: downstream regulator tank binds to the cd40 recognition2 site on traf3 23 c2npsD_ not modelled 36.3 13 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 24 c2zdiC_ not modelled 30.9 11 PDB header:chaperone Chain: C: PDB Molecule:prefoldin subunit alpha; PDBTitle: crystal structure of prefoldin from pyrococcus horikoshii2 ot3 25 c1fllA_ not modelled 29.4 13 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor associated factor 3; PDBTitle: molecular basis for cd40 signaling mediated by traf3 26 c3k8vB_ not modelled 27.3 12 PDB header:structural protein Chain: B: PDB Molecule:flagellin homolog; PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20 27 c1m1jA_ not modelled 26.7 9 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 28 c1zxaB_ not modelled 24.8 10 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 29 c1r48A_ not modelled 22.4 7 PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop 30 c3b5nL_ not modelled 22.2 17 PDB header:membrane protein Chain: L: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex 31 c2j69D_ not modelled 22.2 7 PDB header:hydrolase Chain: D: PDB Molecule:bacterial dynamin-like protein; PDBTitle: bacterial dynamin-like protein bdlp 32 c2ayuA_ not modelled 21.9 13 PDB header:chaperone Chain: A: PDB Molecule:nucleosome assembly protein; PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling 33 d2ayua1 not modelled 21.9 13 Fold:NAP-like Superfamily:NAP-like Family:NAP-like 34 c1aq5C_ not modelled 20.8 24 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 35 d2j0na1 not modelled 20.4 13 Fold:IpaD-like Superfamily:IpaD-like Family:IpaD-like 36 c2nrjA_ not modelled 20.4 12 PDB header:toxin Chain: A: PDB Molecule:hbl b protein; PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus 37 c1ca9D_ not modelled 19.0 3 PDB header:tnf signaling Chain: D: PDB Molecule:protein (tnf receptor associated factor 2); PDBTitle: structure of tnf receptor associated factor 2 in complex2 with a peptide from tnf-r2 38 d1fxkc_ not modelled 18.3 5 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 39 c1gl2D_ not modelled 17.3 8 PDB header:membrane protein Chain: D: PDB Molecule:syntaxin 8; PDBTitle: crystal structure of an endosomal snare core complex 40 c2zvfG_ not modelled 16.8 7 PDB header:ligase Chain: G: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain 41 c2fxmB_ not modelled 16.3 13 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 42 d1z0pa1 not modelled 15.6 16 Fold:Long alpha-hairpin Superfamily:SPy1572-like Family:SPy1572-like 43 c3bvhE_ not modelled 14.7 15 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 44 c2oqqB_ not modelled 14.4 16 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 45 c3ci9B_ not modelled 14.2 14 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 46 d1ivsa1 not modelled 14.2 13 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 47 c2z5hB_ not modelled 13.8 20 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin PDBTitle: crystal structure of the head-to-tail junction of2 tropomyosin complexed with a fragment of tnt 48 c1l8dB_ not modelled 11.4 12 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 49 c1htmB_ not modelled 11.3 7 PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin ha2 chain; PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion 50 c2oszA_ not modelled 11.1 12 PDB header:structural protein Chain: A: PDB Molecule:nucleoporin p58/p45; PDBTitle: structure of nup58/45 suggests flexible nuclear pore diameter by2 intermolecular sliding 51 d1owaa_ not modelled 11.1 7 Fold:Spectrin repeat-like Superfamily:Spectrin repeat Family:Spectrin repeat 52 c3ibpA_ not modelled 10.9 23 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb 53 c3swfA_ not modelled 10.7 13 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 54 d1wa8b1 not modelled 10.5 18 Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like 55 c2akfB_ not modelled 9.4 10 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 56 c2akfA_ not modelled 9.4 10 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 57 c2akfC_ not modelled 9.4 10 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 58 c3f6hA_ not modelled 8.8 13 PDB header:transferase Chain: A: PDB Molecule:alpha-isopropylmalate synthase; PDBTitle: crystal structure of the regulatory domain of licms in2 complexed with isoleucine - type iii 59 c2xdjF_ not modelled 8.7 13 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 60 c2xzrA_ not modelled 7.6 13 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 61 c3ipkA_ not modelled 7.4 11 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 62 c3bvhC_ not modelled 7.4 6 PDB header:blood clotting Chain: C: PDB Molecule:fibrinogen gamma chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 63 c3l9oA_ not modelled 7.0 14 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome 64 d1hq1a_ not modelled 6.9 22 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 65 c2dq3A_ not modelled 6.9 13 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: crystal structure of aq_298 66 c2hpcH_ not modelled 6.8 11 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 67 c2d3eD_ not modelled 6.8 11 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 68 c3na7A_ not modelled 6.7 5 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 69 d2azeb1 not modelled 6.7 9 Fold:E2F-DP heterodimerization region Superfamily:E2F-DP heterodimerization region Family:E2F dimerization segment 70 c3dtpA_ not modelled 6.6 13 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 71 c1x59A_ not modelled 6.5 20 PDB header:protein binding Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: solution structures of the whep-trs domain of human2 histidyl-trna synthetase 72 c2gtlO_ not modelled 6.5 15 PDB header:oxygen storage/transport Chain: O: PDB Molecule:extracellular hemoglobin linker l3 subunit; PDBTitle: lumbricus erythrocruorin at 3.5a resolution 73 d1e52a_ not modelled 6.5 15 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 74 d1jyoa_ not modelled 6.4 18 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 75 c1dlcA_ not modelled 6.4 11 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 76 c2h3sB_ not modelled 6.4 25 PDB header:de novo protein Chain: B: PDB Molecule:pancreatic hormone; PDBTitle: cis-azobenzene-avian pancreatic polypeptide bound to dpc2 micelles 77 c2h4bC_ not modelled 6.4 25 PDB header:de novo protein Chain: C: PDB Molecule:pancreatic hormone; PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide 78 c2h3tB_ not modelled 6.4 25 PDB header:de novo protein Chain: B: PDB Molecule:pancreatic hormone; PDBTitle: trans-(4-aminomethyl)phenylazobenzoic acid-app bound to dpc2 micelles 79 c2h4bD_ not modelled 6.4 25 PDB header:de novo protein Chain: D: PDB Molecule:pancreatic hormone; PDBTitle: cis-4-aminomethylphenylazobenzoic acid-avian pancreatic2 polypeptide 80 d1r6fa_ not modelled 6.3 15 Fold:Virulence-associated V antigen Superfamily:Virulence-associated V antigen Family:Virulence-associated V antigen 81 c2ym9C_ not modelled 6.3 11 PDB header:cell invasion Chain: C: PDB Molecule:cell invasion protein sipd; PDBTitle: sipd from salmonella typhimurium 82 c2k48A_ not modelled 6.2 24 PDB header:viral protein Chain: A: PDB Molecule:nucleoprotein; PDBTitle: nmr structure of the n-terminal coiled coil domain of the2 andes hantavirus nucleocapsid protein 83 c3rrkA_ not modelled 6.2 5 PDB header:proton transport Chain: A: PDB Molecule:v-type atpase 116 kda subunit; PDBTitle: crystal structure of the cytoplasmic n-terminal domain of subunit i,2 homolog of subunit a, of v-atpase 84 d1w8oa1 not modelled 6.1 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 85 c3g9rF_ not modelled 6.1 0 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 86 c1jsdB_ not modelled 6.1 17 PDB header:viral protein Chain: B: PDB Molecule:haemagglutinin (ha2 chain); PDBTitle: crystal structure of swine h9 haemagglutinin 87 d2okua1 not modelled 6.0 10 Fold:N-cbl like Superfamily:PG0775 C-terminal domain-like Family:PG0775 C-terminal domain-like 88 c2v71A_ not modelled 6.0 13 PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel 89 c2hpcF_ not modelled 5.9 14 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 90 c1bf5A_ not modelled 5.9 8 PDB header:gene regulation/dna Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: tyrosine phosphorylated stat-1/dna complex 91 c2ykqC_ not modelled 5.8 11 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 92 c3bj4B_ not modelled 5.8 9 PDB header:signaling protein Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction 93 c3mtuE_ not modelled 5.8 16 PDB header:contractile protein Chain: E: PDB Molecule:head morphogenesis protein, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 94 c2ic6B_ not modelled 5.7 22 PDB header:viral protein Chain: B: PDB Molecule:nucleocapsid protein; PDBTitle: the coiled-coil domain (residues 1-75) structure of the sin2 nombre virus nucleocapsid protein 95 c1ezjA_ not modelled 5.6 13 PDB header:viral protein, transferase Chain: A: PDB Molecule:nucleocapsid phosphoprotein; PDBTitle: crystal structure of the multimerization domain of the phosphoprotein2 from sendai virus 96 c2ym0B_ not modelled 5.6 12 PDB header:cell invasion Chain: B: PDB Molecule:cell invasion protein sipd; PDBTitle: truncated sipd from salmonella typhimurium 97 c1t6zB_ not modelled 5.5 17 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 98 c1ic2B_ not modelled 5.4 18 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 99 c3hfeC_ not modelled 5.4 14 PDB header:transport protein Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1; PDBTitle: a trimeric form of the kv7.1 a domain tail