Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00722
DateThu Jan 5 10:56:50 GMT 2012
Unique Job ID756f9e53a51a2a6a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3mv14_
Top template information
PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
Confidence and coverage
Confidence:100.0% Coverage: 99%
1011 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWR
Secondary structure 
SS confidence 
Disorder  ??????
???
?
???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  FAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFVPTENP
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLPSEFDLSAFLRA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISDFHVATRFNDDFSRAV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFGGEIIDERGGYADRVTLRLNVENPK
Secondary structure 
SS confidence 
Disorder 
?????
????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LWSAEIPNLYRAVVELHTADGTLIEAEACDVGFREVRIENGLLLLNGKPLLIRGVNRHEH
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  HPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVVDEANIETHG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  MVPMNRLTDDPRWLPAMSERVTRMVQRDRNHPSVIIWSLGNESGHGANHDALYRWIKSVD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  PSRPVQYEGGGADTTATDIICPMYARVDEDQPFPAVPKWSIKKWLSLPGETRPLILCEYA
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  HAMGNSLGGFAKYWQAFRQYPRLQGGFVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  QFCMNGLVFADRTPHPALTEAKHQQQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  GKPLASGEVPLDVAPQGKQLIELPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQ
Secondary structure 
SS confidence 
Disorder 
????
?
?
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  WRLAENLSVTLPAASHAIPHLTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTP
Secondary structure 
SS confidence 
Disorder 
????????????
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  LRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTA
Secondary structure 
SS confidence 
Disorder 
??????????
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  HAWQHQGKTLFISRKTYRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........910.........920.........930.........940.........950.........960
Sequence  LGPQENYPDRLTAACFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNI
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........970.........980.........990.........1000.........1010.........1020
Sequence  SRYSQQQLMETSHRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   ....
Sequence  WCQK
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3mv1 chain 4

3D model

Region: 14 - 1024
Aligned: 1011
Modelled: 1011
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium

Phyre2

PDB 1jz6 chain C

3D model

Region: 14 - 1024
Aligned: 1011
Modelled: 1011
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole

Phyre2

PDB 3oba chain A

3D model

Region: 11 - 1024
Aligned: 966
Modelled: 989
Confidence: 100.0%
Identity: 32%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis

Phyre2

PDB 3bga chain B

3D model

Region: 13 - 1022
Aligned: 965
Modelled: 986
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482

Phyre2

PDB 1yq2 chain C

3D model

Region: 17 - 1022
Aligned: 952
Modelled: 977
Confidence: 100.0%
Identity: 35%
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)

Phyre2

PDB 3gm8 chain A

3D model

Region: 51 - 719
Aligned: 608
Modelled: 644
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus

Phyre2

PDB 3cmg chain A

3D model

Region: 50 - 670
Aligned: 568
Modelled: 606
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis

Phyre2

PDB 3fn9 chain B

3D model

Region: 49 - 719
Aligned: 602
Modelled: 638
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis

Phyre2

PDB 3lpg chain A

3D model

Region: 47 - 630
Aligned: 526
Modelled: 528
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea

Phyre2

PDB 2je8 chain B

3D model

Region: 46 - 754
Aligned: 655
Modelled: 685
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-mannosidase;
PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron

Phyre2

PDB 2vzv chain B

3D model

Region: 49 - 751
Aligned: 668
Modelled: 695
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan

Phyre2

PDB 1bhg chain B

3D model

Region: 48 - 628
Aligned: 542
Modelled: 554
Confidence: 100.0%
Identity: 24%
PDB header:glycosidase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: human beta-glucuronidase at 2.6 a resolution

Phyre2

PDB 1jz8 chain A domain 4

3D model

Region: 732 - 1024
Aligned: 293
Modelled: 293
Confidence: 100.0%
Identity: 100%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: beta-Galactosidase, domain 5

Phyre2

PDB 1yq2 chain A domain 4

3D model

Region: 733 - 1022
Aligned: 275
Modelled: 287
Confidence: 100.0%
Identity: 24%
Fold: Supersandwich
Superfamily: Galactose mutarotase-like
Family: beta-Galactosidase, domain 5

Phyre2

PDB 1jz8 chain A domain 5

3D model

Region: 335 - 626
Aligned: 292
Modelled: 292
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2

PDB 1yq2 chain A domain 5

3D model

Region: 336 - 626
Aligned: 290
Modelled: 291
Confidence: 100.0%
Identity: 43%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2

PDB 1jz8 chain A domain 3

3D model

Region: 14 - 219
Aligned: 206
Modelled: 206
Confidence: 100.0%
Identity: 100%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: beta-Galactosidase/glucuronidase, N-terminal domain

Phyre2

PDB 1yq2 chain A domain 3

3D model

Region: 12 - 220
Aligned: 197
Modelled: 209
Confidence: 100.0%
Identity: 44%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: beta-Galactosidase/glucuronidase, N-terminal domain

Phyre2

PDB 2je8 chain A domain 5

3D model

Region: 334 - 627
Aligned: 274
Modelled: 294
Confidence: 100.0%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2

PDB 2vzs chain A domain 5

3D model

Region: 340 - 626
Aligned: 273
Modelled: 287
Confidence: 100.0%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-glycanases

Phyre2
1
c3mv14_
2
c1jz6C_
3
c3obaA_
4
c3bgaB_
5
c1yq2C_
6
c3gm8A_
7
c3cmgA_
8
c3fn9B_
9
c3lpgA_
10
c2je8B_
11
c2vzvB_
12
c1bhgB_
13
d1jz8a4
14
d1yq2a4
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d1jz8a5
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d1yq2a5
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d1jz8a3
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d2je8a5
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d2vzsa5
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3mv14_
100.0 100 PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
2c1jz6C_
100.0 100 PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole
3c3obaA_
100.0 32 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
4c3bgaB_
100.0 33 PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
5c1yq2C_
100.0 35 PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)
6c3gm8A_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
7c3cmgA_
100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
8c3fn9B_
100.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
9c3lpgA_
100.0 27 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea
10c2je8B_
100.0 20 PDB header:hydrolase
Chain: B: PDB Molecule:beta-mannosidase;
PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron
11c2vzvB_
100.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan
12c1bhgB_
100.0 24 PDB header:glycosidase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: human beta-glucuronidase at 2.6 a resolution
13d1jz8a4
100.0 100 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
14d1yq2a4
100.0 24 Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
15d1jz8a5
100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
16d1yq2a5
100.0 43 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
17d1jz8a3
100.0 100 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
18d1yq2a3
100.0 44 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
19d2je8a5
100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
20d2vzsa5
100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
21d1bhga3
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
22d1uuqa_
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
23c1uz4A_
not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
24d1tg7a5
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Glycosyl hydrolases family 35 catalytic domain
25d1bhga2
not modelled 100.0 22 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
26c2w62A_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:glycolipid-anchored surface protein 2;
PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose
27d2je8a4
not modelled 100.0 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
28d2c0ha1
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
29d1wkya2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
30d2vzsa4
not modelled 100.0 20 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
31d1qnra_
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
32d1rh9a1
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
33c3jugA_
not modelled 99.9 17 PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5
34d1tvna1
not modelled 99.9 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
35d1bqca_
not modelled 99.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
36d7a3ha_
not modelled 99.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
37d1egza_
not modelled 99.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
38c3pzvB_
not modelled 99.9 15 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168
39c2cksB_
not modelled 99.9 16 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase e-5;
PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5)
40d1jz8a2
not modelled 99.9 100 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
41c3civA_
not modelled 99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius
42d1ecea_
not modelled 99.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
43d1tg7a2
not modelled 99.9 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Beta-galactosidase LacA, domains 4 and 5
44c1wkyA_
not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of alkaline mannanase from bacillus sp. strain jamb-2 602: catalytic domain and its carbohydrate binding module
45c3thdD_
not modelled 99.9 17 PDB header:hydrolase
Chain: D: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin
46d1yq2a1
not modelled 99.8 28 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
47d1jz8a1
not modelled 99.8 100 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
48c2zunB_
not modelled 99.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase;
PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii
49d1kwga2
not modelled 99.7 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
50c3d3aA_
not modelled 99.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron
51c2oylB_
not modelled 99.6 20 PDB header:hydrolase
Chain: B: PDB Molecule:endoglycoceramidase ii;
PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex
52c3ogrA_
not modelled 99.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose
53d2vzsa1
not modelled 99.6 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
54d1g01a_
not modelled 99.6 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
55c1xc6A_
not modelled 99.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose
56c3pzqA_
not modelled 99.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol
57c1kwgA_
not modelled 99.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
58d1vjza_
not modelled 99.5 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
59d1tg7a3
not modelled 99.5 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Beta-galactosidase LacA, domains 4 and 5
60d1yq2a2
not modelled 99.5 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
61d1bhga1
not modelled 99.5 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
62d2je8a1
not modelled 99.4 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
63d1hjqa_
not modelled 99.4 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
64c3ncoA_
not modelled 99.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase fncel5a;
PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1
65d1ceoa_
not modelled 99.3 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
66c2jepB_
not modelled 99.3 17 PDB header:hydrolase
Chain: B: PDB Molecule:xyloglucanase;
PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli
67c3aysA_
not modelled 99.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose
68c3mmwB_
not modelled 99.2 18 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase;
PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima
69c3icgD_
not modelled 99.2 16 PDB header:hydrolase
Chain: D: PDB Molecule:endoglucanase d;
PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
70d1fh9a_
not modelled 99.2 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
71d1v6wa2
not modelled 99.2 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
72d1vbua1
not modelled 99.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
73d1w91a2
not modelled 99.2 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
74d1hjsa_
not modelled 99.2 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
75d2pb1a1
not modelled 99.1 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
76d1h1na_
not modelled 99.1 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
77c3l55B_
not modelled 99.1 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase;
PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii
78d1uhva2
not modelled 99.1 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
79d1nq6a_
not modelled 99.1 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
80c3qr3B_
not modelled 99.1 17 PDB header:hydrolase
Chain: B: PDB Molecule:endoglucanase eg-ii;
PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei)
81c3ndyA_
not modelled 99.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase d;
PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
82c3u7vA_
not modelled 99.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
83d1v6ya_
not modelled 99.1 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
84d1v0la_
not modelled 99.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
85d1h4pa_
not modelled 98.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
86d1ur4a_
not modelled 98.9 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
87c2y8kA_
not modelled 98.9 22 PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate binding family 6;
PDBTitle: structure of ctgh5-cbm6, an arabinoxylan-specific xylanase.
88d1i1wa_
not modelled 98.9 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
89c3kzsD_
not modelled 98.9 17 PDB header:hydrolase
Chain: D: PDB Molecule:glycosyl hydrolase family 5;
PDBTitle: crystal structure of glycosyl hydrolase family 5 (np_809925.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
90d1us3a2
not modelled 98.9 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
91d1n82a_
not modelled 98.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
92d1ta3b_
not modelled 98.8 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
93d1w32a_
not modelled 98.8 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
94d1edga_
not modelled 98.8 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
95c2depA_
not modelled 98.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:thermostable celloxylanase;
PDBTitle: crystal structure of xylanase b from clostridium2 stercorarium f9
96c3emzA_
not modelled 98.7 10 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative
97d1tuxa_
not modelled 98.7 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
98d1bg4a_
not modelled 98.7 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
99c1xyzA_
not modelled 98.7 15 PDB header:glycosyltransferase
Chain: A: PDB Molecule:1,4-beta-d-xylan-xylanohydrolase;
PDBTitle: a common protein fold and similar active site in two2 distinct families of beta-glycanases
100d1xyza_
not modelled 98.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
101c2okxB_
not modelled 98.6 28 PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
102d1ur1a_
not modelled 98.6 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
103d1foba_
not modelled 98.6 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
104c2bs9B_
not modelled 98.5 15 PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylosidase;
PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus
105c2cncA_
not modelled 98.5 14 PDB header:hydrolase
Chain: A: PDB Molecule:endoxylanase;
PDBTitle: family 10 xylanase
106c1uhvD_
not modelled 98.4 13 PDB header:hydrolase
Chain: D: PDB Molecule:beta-xylosidase;
PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase
107d1ug6a_
not modelled 98.2 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
108c3ahxC_
not modelled 98.0 12 PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase a;
PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans
109d1r85a_
not modelled 98.0 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
110c1iszA_
not modelled 98.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-d-xylanase;
PDBTitle: crystal structure of xylanase from streptomyces2 olivaceoviridis e-86 complexed with galactose
111c2vrqB_
not modelled 98.0 14 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-arabinofuranosidase;
PDBTitle: structure of an inactive mutant of arabinofuranosidase from2 thermobacillus xylanilyticus in complex with a3 pentasaccharide
112c2j75A_
not modelled 97.9 13 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase a;
PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin
113d1aq0a_
not modelled 97.8 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
114c2w5fB_
not modelled 97.8 13 PDB header:hydrolase
Chain: B: PDB Molecule:endo-1,4-beta-xylanase y;
PDBTitle: high resolution crystallographic structure of the2 clostridium thermocellum n-terminal endo-1,4-beta-d-3 xylanase 10b (xyn10b) cbm22-1-gh10 modules complexed with4 xylohexaose
115d1e4ia_
not modelled 97.7 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
116c2fglA_
not modelled 97.7 11 PDB header:hydrolase
Chain: A: PDB Molecule:alkaline thermostable endoxylanase;
PDBTitle: an alkali thermostable f/10 xylanase from alkalophilic2 bacillus sp. ng-27
117c3fiyA_
not modelled 97.6 17 PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of bglb
118d1vffa1
not modelled 97.6 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
119d2cyga1
not modelled 97.5 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
120d1vema2
not modelled 97.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0