Email l.a.kelley@imperial.ac.uk Description P11458 Date Thu Jan 5 11:32:40 GMT 2012 Unique Job ID 519ba6210170a27a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qs0A_ 100.0 39 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 2 d1wzua1 100.0 40 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 3 c3dmpD_ 74.2 23 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 4 d2nx2a1 70.1 10 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 5 c2e55D_ 61.9 21 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 6 c2ekcA_ 59.5 25 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 7 c3fn9B_ 57.9 16 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 8 c3cmgA_ 55.2 23 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 9 d16pka_ 52.6 21 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 10 d1xhja_ 51.4 12 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 11 c3gm8A_ 48.1 20 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 12 d2tpsa_ 47.2 16 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 13 d1j97a_ 46.8 13 Fold:HAD-like Superfamily:HAD-like Family:Phosphoserine phosphatase 14 d1jbqa_ 46.7 20 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes 15 c1jbqD_ 46.7 20 PDB header:lyase Chain: D: PDB Molecule:cystathionine beta-synthase; PDBTitle: structure of human cystathionine beta-synthase: a unique pyridoxal 5'-2 phosphate dependent hemeprotein 16 d1ybha1 45.6 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 17 c3iz6A_ 45.1 15 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 18 c3k7pA_ 42.0 20 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 19 d1vhca_ 41.1 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 20 d2ez9a1 40.1 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 21 c3m1pA_ not modelled 39.5 20 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 22 c3p04B_ not modelled 39.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 23 d1ojra_ not modelled 38.7 7 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 24 c2pcjB_ not modelled 38.5 11 PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5 25 c3p9zA_ not modelled 37.6 19 PDB header:ligase Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd); PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695 26 d1jr2a_ not modelled 37.4 19 Fold:HemD-like Superfamily:HemD-like Family:HemD-like 27 c1jr2A_ not modelled 37.4 19 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase 28 c1s1hB_ not modelled 37.3 18 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 29 c2ejaB_ not modelled 33.3 14 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 30 c1zq1B_ not modelled 33.2 26 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 31 d1zbra1 not modelled 32.5 20 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 32 c3p04A_ not modelled 32.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 33 c2infB_ not modelled 31.7 13 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis 34 c3bg3B_ not modelled 31.3 22 PDB header:ligase Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial; PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus) 35 d1hrua_ not modelled 29.8 15 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 36 c1d7kB_ not modelled 29.7 17 PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution 37 d1veha_ not modelled 29.4 9 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 38 d1zq1a2 not modelled 29.3 26 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 39 c1oidA_ not modelled 28.8 15 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 40 d1bd3a_ not modelled 28.6 21 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 41 d2awna2 not modelled 28.5 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 42 d1bw0a_ not modelled 28.2 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 43 c2p5tA_ not modelled 27.6 30 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator peza; PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae 44 d2pjua1 not modelled 27.5 17 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 45 c3dwgA_ not modelled 26.5 15 PDB header:transferase Chain: A: PDB Molecule:cysteine synthase b; PDBTitle: crystal structure of a sulfur carrier protein complex found in the2 cysteine biosynthetic pathway of mycobacterium tuberculosis 46 d1agxa_ not modelled 26.4 29 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 47 d1xkna_ not modelled 26.2 16 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Porphyromonas-type peptidylarginine deiminase 48 d1pvda1 not modelled 26.2 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 49 d1wbha1 not modelled 25.4 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 50 d1v9sa1 not modelled 25.1 24 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 51 d1pswa_ not modelled 25.0 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:ADP-heptose LPS heptosyltransferase II 52 c2xznB_ not modelled 24.8 19 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 53 d1b0ua_ not modelled 24.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 54 d1phpa_ not modelled 24.1 17 Fold:Phosphoglycerate kinase Superfamily:Phosphoglycerate kinase Family:Phosphoglycerate kinase 55 c3hbmA_ not modelled 23.9 11 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 56 c3nm3D_ not modelled 23.3 14 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 57 d1jcua_ not modelled 22.9 10 Fold:YrdC/RibB Superfamily:YrdC/RibB Family:YrdC-like 58 c2yswB_ not modelled 22.8 9 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of the 3-dehydroquinate dehydratase from aquifex2 aeolicus vf5 59 c2htmB_ not modelled 22.8 23 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 60 d1g2912 not modelled 22.0 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 61 c2ehhE_ not modelled 20.3 19 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 62 c3tovB_ not modelled 20.0 13 PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 63 c3bchA_ not modelled 19.9 14 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 64 d1i5ea_ not modelled 19.7 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 65 c3bgaB_ not modelled 19.3 31 PDB header:hydrolase Chain: B: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482 66 c3il0B_ not modelled 17.7 14 PDB header:hydrolase Chain: B: PDB Molecule:aminopeptidase p; xaa-pro aminopeptidase; PDBTitle: the crystal structure of the aminopeptidase p,xaa-pro aminopeptidase2 from streptococcus thermophilus 67 c2yz2B_ not modelled 17.5 12 PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system 68 d1usha2 not modelled 17.4 16 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 69 c3jyfB_ not modelled 17.2 11 PDB header:hydrolase Chain: B: PDB Molecule:2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- PDBTitle: the crystal structure of a 2,3-cyclic nucleotide 2-2 phosphodiesterase/3-nucleotidase bifunctional periplasmic precursor3 protein from klebsiella pneumoniae subsp. pneumoniae mgh 78578 70 c2jnvA_ not modelled 16.8 14 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 71 d3dhwc1 not modelled 16.7 7 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 72 d2d6fa2 not modelled 16.4 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 73 c3nxkE_ not modelled 16.3 29 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 74 c1zmrA_ not modelled 16.3 15 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of the e. coli phosphoglycerate kinase 75 d1r3sa_ not modelled 16.1 16 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 76 d2ocda1 not modelled 16.1 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 77 d2vzsa5 not modelled 16.0 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 78 c2k4mA_ not modelled 16.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 79 c3pihA_ not modelled 16.0 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 80 c1zfjA_ not modelled 15.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 81 c2e0kA_ not modelled 15.6 8 PDB header:transferase Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase; PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis 82 c2vzvB_ not modelled 15.6 20 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 83 c1q1bD_ not modelled 15.5 21 PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form 84 c2r8zC_ not modelled 15.4 30 PDB header:hydrolase Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase; PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion 85 d1pvta_ not modelled 15.4 10 Fold:AraD/HMP-PK domain-like Superfamily:AraD/HMP-PK domain-like Family:AraD-like aldolase/epimerase 86 c2i4rA_ not modelled 15.3 18 PDB header:hydrolase Chain: A: PDB Molecule:v-type atp synthase subunit f; PDBTitle: crystal structure of the v-type atp synthase subunit f from2 archaeoglobus fulgidus. nesg target gr52a. 87 c2kg4A_ not modelled 15.2 32 PDB header:cell cycle Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein PDBTitle: three-dimensional structure of human gadd45alpha in2 solution by nmr 88 c1wnfA_ not modelled 15.2 26 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 89 c2d3wB_ not modelled 15.1 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:probable atp-dependent transporter sufc; PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery 90 c3m1yA_ not modelled 15.0 15 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase (serb); PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori 91 c1nm3B_ not modelled 14.7 24 PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5 92 c2yxgD_ not modelled 14.7 13 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 93 c2olkD_ not modelled 14.7 12 PDB header:hydrolase Chain: D: PDB Molecule:amino acid abc transporter; PDBTitle: abc protein artp in complex with adp-beta-s 94 c2o7qA_ not modelled 14.7 15 PDB header:oxidoreductase,transferase Chain: A: PDB Molecule:bifunctional 3-dehydroquinate dehydratase/shikimate PDBTitle: crystal structure of the a. thaliana dhq-dehydroshikimate-sdh-2 shikimate-nadp(h) 95 d1ji0a_ not modelled 14.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 96 d1g6ha_ not modelled 14.6 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 97 c3eebB_ not modelled 14.6 25 PDB header:toxin Chain: B: PDB Molecule:rtx toxin rtxa; PDBTitle: structure of the v. cholerae rtx cysteine protease domain 98 c3mc3A_ not modelled 14.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dsre/dsrf-like family protein; PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution 99 d1wsaa_ not modelled 14.3 24 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase