Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	K	F	I	F	V	L	L	T	L	L	L	V	S	P	F	S	F	A	M	K	G	I	I	W	Q	P	Q	N	R	D	S	Q	V	T	D	T	Q	W	Q	G	L	M	S	Q	L	R	L	Q	G	F	D	T	L	V	L	Q	W	T
Secondary structure
SS confidence
Disorder		?	?										?	?	?	?	?	?	?	?	?	?										?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	Y	G	D	A	F	T	Q	P	E	Q	R	T	L	L	F	K	R	A	A	A	A	Q	Q	A	G	L	K	L	I	V	G	L	N	A	D	P	E	F	F	M	H	Q	K	Q	S	S	A	A	L	E	S	Y	L	N	R	L	L	A	A
Secondary structure
SS confidence
Disorder					?	?	?	?		?																															?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	L	Q	Q	A	R	L	W	S	A	A	P	G	I	T	P	D	G	W	Y	I	S	A	E	I	D	D	L	N	W	R	S	E	A	A	R	Q	P	L	L	T	W	L	N	N	A	Q	R	L	I	S	D	V	S	A	K	P	V	Y	I
Secondary structure
SS confidence
Disorder													?																																									?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	S	F	F	A	G	N	M	S	P	D	G	Y	R	Q	L	L	E	H	V	K	A	T	G	V	N	V	W	V	Q	D	G	S	G	V	D	K	L	T	A	E	Q	R	E	R	Y	L	Q	A	S	A	D	C	Q	S	P	A	P	A	S
Secondary structure
SS confidence
Disorder					?	?																																															?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Sequence		G	V	V	Y	E	L	F	V	A	G	K	G	K	T	F	T	A	K	P	K	P	D	A	E	I	A	S	L	L	A	K	R	S	S	C	G	K	D	T	L	Y	F	S	L	R	Y	L	P	V	A	H	G	I	L	E	Y
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?	?	?					?					?	?	?	?	?	?	?	?	?			?											?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2w62 chain A Region: 21 - 188 Aligned: 149 Modelled: 168 Confidence: 98.3% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose Phyre2 PDB 1kwg chain A Region: 23 - 164 Aligned: 134 Modelled: 142 Confidence: 98.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase Phyre2 PDB 3u7v chain A Region: 33 - 196 Aligned: 156 Modelled: 162 Confidence: 97.6% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15. Phyre2 PDB 1bhg chain A domain 3 Region: 21 - 189 Aligned: 144 Modelled: 157 Confidence: 97.5% Identity: 12% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 2bs9 chain B Region: 37 - 207 Aligned: 166 Modelled: 171 Confidence: 97.4% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:beta-xylosidase; PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus Phyre2 PDB 1w91 chain A domain 2 Region: 37 - 190 Aligned: 154 Modelled: 154 Confidence: 97.4% Identity: 10% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 3thd chain D Region: 34 - 166 Aligned: 128 Modelled: 133 Confidence: 97.3% Identity: 14% PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin Phyre2 PDB 1uhv chain A domain 2 Region: 37 - 194 Aligned: 155 Modelled: 158 Confidence: 97.3% Identity: 12% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1vjz chain A Region: 41 - 181 Aligned: 136 Modelled: 141 Confidence: 97.3% Identity: 7% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 2vzs chain A domain 5 Region: 21 - 182 Aligned: 137 Modelled: 143 Confidence: 97.2% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1uhv chain D Region: 37 - 190 Aligned: 150 Modelled: 154 Confidence: 97.1% Identity: 13% PDB header:hydrolase Chain: D: PDB Molecule:beta-xylosidase; PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase Phyre2 PDB 1j0y chain D Region: 35 - 172 Aligned: 132 Modelled: 136 Confidence: 97.1% Identity: 17% PDB header:hydrolase Chain: D: PDB Molecule:beta-amylase; PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose Phyre2 PDB 3jug chain A Region: 35 - 210 Aligned: 159 Modelled: 172 Confidence: 97.1% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:beta-mannanase; PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5 Phyre2 PDB 1jz8 chain A domain 5 Region: 21 - 179 Aligned: 133 Modelled: 159 Confidence: 97.0% Identity: 10% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 3d3a chain A Region: 34 - 166 Aligned: 127 Modelled: 129 Confidence: 96.9% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron Phyre2 PDB 1tg7 chain A domain 5 Region: 36 - 189 Aligned: 150 Modelled: 154 Confidence: 96.8% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Glycosyl hydrolases family 35 catalytic domain Phyre2 PDB 2je8 chain A domain 5 Region: 21 - 179 Aligned: 138 Modelled: 146 Confidence: 96.8% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1bhg chain B Region: 21 - 182 Aligned: 137 Modelled: 152 Confidence: 96.7% Identity: 12% PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution Phyre2 PDB 1edg chain A Region: 41 - 186 Aligned: 146 Modelled: 146 Confidence: 96.7% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1yq2 chain A domain 5 Region: 21 - 189 Aligned: 140 Modelled: 156 Confidence: 96.6% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 PDB 1fh9 chain A Region: 74 - 282 Aligned: 197 Modelled: 197 Confidence: 93.6% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: beta-glycanases Phyre2 1 c2w62A_ 2 c1kwgA_ 3 c3u7vA_ 4 d1bhga3 5 c2bs9B_ 6 d1w91a2 7 c3thdD_ 8 d1uhva2 9 d1vjza_ 10 d2vzsa5 11 c1uhvD_ 12 c1j0yD_ 13 c3jugA_ 14 d1jz8a5 15 c3d3aA_ 16 d1tg7a5 17 d2je8a5 18 c1bhgB_ 19 d1edga_ 20 d1yq2a5 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 d1fh9a_ 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2w62A_ 98.3 17 PDB header:transferase Chain: A: PDB Molecule:glycolipid-anchored surface protein 2; PDBTitle: saccharomyces cerevisiae gas2p in complex with2 laminaripentaose 2 c1kwgA_ 98.0 15 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase 3 c3u7vA_ 97.6 16 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15. 4 d1bhga3 97.5 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 5 c2bs9B_ 97.4 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-xylosidase; PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus 6 d1w91a2 97.4 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 7 c3thdD_ 97.3 14 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 8 d1uhva2 97.3 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 9 d1vjza_ 97.3 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 10 d2vzsa5 97.2 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 11 c1uhvD_ 97.1 13 PDB header:hydrolase Chain: D: PDB Molecule:beta-xylosidase; PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase 12 c1j0yD_ 97.1 17 PDB header:hydrolase Chain: D: PDB Molecule:beta-amylase; PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose 13 c3jugA_ 97.1 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-mannanase; PDBTitle: crystal structure of endo-beta-1,4-mannanase from the alkaliphilic2 bacillus sp. n16-5 14 d1jz8a5 97.0 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 15 c3d3aA_ 96.9 17 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron 16 d1tg7a5 96.8 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Glycosyl hydrolases family 35 catalytic domain 17 d2je8a5 96.8 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 18 c1bhgB_ 96.7 12 PDB header:glycosidase Chain: B: PDB Molecule:beta-glucuronidase; PDBTitle: human beta-glucuronidase at 2.6 a resolution 19 d1edga_ 96.7 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 20 d1yq2a5 96.6 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 21 d1wkya2 not modelled 96.5 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 22 d2pb1a1 not modelled 96.5 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 23 c3lpgA_ not modelled 96.3 16 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 24 d1kwga2 not modelled 96.3 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 25 c3cmgA_ not modelled 96.1 11 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 26 c2jepB_ not modelled 96.0 11 PDB header:hydrolase Chain: B: PDB Molecule:xyloglucanase; PDBTitle: native family 5 xyloglucanase from paenibacillus pabuli 27 d1vema2 not modelled 95.8 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 28 c3civA_ not modelled 95.5 13 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius 29 d1qnra_ not modelled 95.4 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 30 c3mmwB_ not modelled 95.3 13 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase cel5a from the hyperthermophilic2 thermotoga maritima 31 d1rh9a1 not modelled 95.1 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 32 d1ecea_ not modelled 95.1 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 33 c3ogrA_ not modelled 94.8 15 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 34 c2vzvB_ not modelled 94.3 16 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 35 c3pzqA_ not modelled 94.2 14 PDB header:hydrolase Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol 36 d1bqca_ not modelled 94.2 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 37 d1h4pa_ not modelled 94.0 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 38 d1fh9a_ 93.6 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 39 c3ncoA_ not modelled 93.2 13 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase fncel5a; PDBTitle: crystal structure of fncel5a from f. nodosum rt17-b1 40 c3ndyA_ not modelled 92.8 17 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase d; PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 41 c3gm8A_ not modelled 92.4 13 PDB header:hydrolase Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase; PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus 42 c3l55B_ not modelled 91.8 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase; PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii 43 d1ur4a_ not modelled 91.7 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 44 d1nq6a_ not modelled 91.5 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 45 d1foba_ not modelled 91.5 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 46 d1h1na_ not modelled 91.2 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 47 d7a3ha_ not modelled 91.1 6 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 48 d1v0la_ not modelled 90.8 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 49 d1us3a2 not modelled 89.8 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 50 c3icgD_ not modelled 89.7 17 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 51 d1n82a_ not modelled 89.4 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 52 c2je8B_ not modelled 89.1 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 53 c1yq2C_ not modelled 88.4 14 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1) 54 d2c0ha1 not modelled 86.9 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 55 c3aysA_ not modelled 86.7 11 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 56 c1xc6A_ not modelled 86.6 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose 57 d1vbua1 not modelled 86.6 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 58 d1v6wa2 not modelled 86.6 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 59 d1v6ya_ not modelled 86.2 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 60 d1ea9c3 not modelled 86.0 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 61 c3fn9B_ not modelled 85.8 12 PDB header:hydrolase Chain: B: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 62 d1hjsa_ not modelled 85.6 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 63 d1hjqa_ not modelled 85.6 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 64 c2wcsA_ not modelled 84.5 10 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase, catalytic region; PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde) 65 d1ceoa_ not modelled 83.1 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 66 c1uz4A_ not modelled 82.4 12 PDB header:hydrolase Chain: A: PDB Molecule:man5a; PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis 67 d1uuqa_ not modelled 82.4 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 68 c3qr3B_ not modelled 82.2 11 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase eg-ii; PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei) 69 c2z1kA_ not modelled 82.2 15 PDB header:hydrolase Chain: A: PDB Molecule:(neo)pullulanase; PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8 70 c2wvsD_ not modelled 81.0 14 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 71 c3emzA_ not modelled 78.2 16 PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase; PDBTitle: crystal structure of xylanase xynb from paenibacillus2 barcinonensis complexed with a conduramine derivative 72 d1ta3b_ not modelled 77.3 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 73 d1m7xa3 not modelled 75.8 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 c3mo4B_ not modelled 74.4 16 PDB header:hydrolase Chain: B: PDB Molecule:alpha-1,3/4-fucosidase; PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697 75 c2zunB_ not modelled 74.3 16 PDB header:hydrolase Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase; PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii 76 d1tuxa_ not modelled 74.3 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 77 c1hl8B_ not modelled 73.5 11 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase 78 c2cksB_ not modelled 73.3 15 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase e-5; PDBTitle: x-ray crystal structure of the catalytic domain of2 thermobifida fusca endoglucanase cel5a (e5) 79 c2aaaA_ not modelled 72.6 19 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus 80 c3pzvB_ not modelled 71.6 10 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase; PDBTitle: c2 crystal form of the endo-1,4-beta-glucanase from bacillus subtilis2 168 81 d1ua7a2 not modelled 70.5 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 c3mv14_ not modelled 70.2 12 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 83 d1hl9a2 not modelled 70.1 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 84 c2depA_ not modelled 68.7 15 PDB header:hydrolase Chain: A: PDB Molecule:thermostable celloxylanase; PDBTitle: crystal structure of xylanase b from clostridium2 stercorarium f9 85 d1ht6a2 not modelled 67.3 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 86 d2csua1 not modelled 66.8 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 87 d2guya2 not modelled 66.6 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 88 c1yveK_ not modelled 64.6 17 PDB header:oxidoreductase Chain: K: PDB Molecule:acetohydroxy acid isomeroreductase; PDBTitle: acetohydroxy acid isomeroreductase complexed with nadph,2 magnesium and inhibitor ipoha (n-hydroxy-n-3 isopropyloxamate) 89 d1w32a_ not modelled 62.7 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 90 d1wzla3 not modelled 62.6 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 91 d1ur1a_ not modelled 62.2 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 92 d1gnxa_ not modelled 59.9 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 93 c3obaA_ not modelled 58.9 12 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 94 d1cgta4 not modelled 58.8 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 95 d1ug6a_ not modelled 58.6 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 96 c3th6B_ not modelled 58.2 18 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus. 97 d1neya_ not modelled 58.0 16 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 98 c1jz6C_ not modelled 57.9 12 PDB header:hydrolase Chain: C: PDB Molecule:beta-galactosidase; PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole 99 d1bf2a3 not modelled 57.6 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 100 c2j75A_ not modelled 57.1 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase a; PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin 101 d1n55a_ not modelled 56.9 16 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 102 d1o5xa_ not modelled 56.8 11 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 103 d1b9ba_ not modelled 56.8 14 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 104 d1suxa_ not modelled 56.4 25 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 105 d1lwha2 not modelled 56.3 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 106 d1cyga4 not modelled 56.0 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 107 c3gzaB_ not modelled 55.7 10 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution 108 d1gcya2 not modelled 55.5 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 109 d2aaaa2 not modelled 55.1 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 110 d1kv5a_ not modelled 54.8 23 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 111 c3m9yB_ not modelled 54.6 20 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution 112 d1m6ja_ not modelled 54.2 20 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 113 c3gvgA_ not modelled 53.4 27 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase from mycobacterium2 tuberculosis 114 c1yyaA_ not modelled 53.2 16 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8 115 d1ud2a2 not modelled 52.8 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 116 c2oylB_ not modelled 52.5 11 PDB header:hydrolase Chain: B: PDB Molecule:endoglycoceramidase ii; PDBTitle: endo-glycoceramidase ii from rhodococcus sp.: cellobiose-like2 imidazole complex 117 d1eh9a3 not modelled 51.9 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 118 c1e40A_ not modelled 51.1 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a 119 c3bmwA_ not modelled 50.6 15 PDB header:transferase Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase; PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor 120 d1sw3a_ not modelled 50.4 20 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0