PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yyaA_

Fold library id	PDB Header	Molecule	Title
c1yyaA_	PDB header: isomerase	Chain: A: PDB Molecule: triosephosphate isomerase;	PDBTitle: crystal structure of tt0473, putative triosephosphate2 isomerase from thermus thermophilus hb8

Links to external resources
Added to library: Tue Mar 16 14:24:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M R R V L V A G N W K M H K T P S E A R V W F A E L K R L L P P L Q S E A A V L P A F P I L P V A K E V L A E T Q V G Y G A Q D V S A H K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
G G G T T S S
S
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G A Y T G E V S A R M L S D L G C R Y A I V G H S E R R R Y H G E T D A L V A E K A K R L L E E G I T P I L C V G E P L E V R E K G E A V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
T T
S S
S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y T L R Q L R G S L E G V E P P G P E A L V I A Y E P V W A I G T G K N A T P E D A E A M H Q A I R K A L S E R Y G E A F A S R V R I L Y G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S G G G
G G G S S S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence G S V N P K N F A D L L S M P N V D G G L V G G A S L E L E S F L A L L R I A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T T S T T
S G G G S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	R	R	V	L	V	A	G	N	W	K	M	H	K	T	P	S	E	A	R	V	W	F	A	E	L	K	R	L	L	P	P	L	Q	S	E	A	A	V	L	P	A	F	P	I	L	P	V	A	K	E	V	L	A	E	T	Q	V	G	Y	G	A	Q	D	V	S	A	H	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																						S	S								G	G	G									T	T	S	S						S				S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	A	Y	T	G	E	V	S	A	R	M	L	S	D	L	G	C	R	Y	A	I	V	G	H	S	E	R	R	R	Y	H	G	E	T	D	A	L	V	A	E	K	A	K	R	L	L	E	E	G	I	T	P	I	L	C	V	G	E	P	L	E	V	R	E	K	G	E	A	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		T	T										T	T		S					S								S																	T	T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	T	L	R	Q	L	R	G	S	L	E	G	V	E	P	P	G	P	E	A	L	V	I	A	Y	E	P	V	W	A	I	G	T	G	K	N	A	T	P	E	D	A	E	A	M	H	Q	A	I	R	K	A	L	S	E	R	Y	G	E	A	F	A	S	R	V	R	I	L	Y	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T				S	S	G	G	G								G	G	G	S	S	S	S																													T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	G	S	V	N	P	K	N	F	A	D	L	L	S	M	P	N	V	D	G	G	L	V	G	G	A	S	L	E	L	E	S	F	L	A	L	L	R	I	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			T	T	T						T	S	T	T							S	G	G	G	S	S