Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6L0
DateThu Jan 5 11:03:24 GMT 2012
Unique Job ID43ca39bb4f462e22

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1p1xa_
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
Confidence and coverage
Confidence:100.0% Coverage: 97%
250 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTL
Secondary structure 
SS confidence 
Disorder  ?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  KEQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFD
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPE
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGASSL
Secondary structure 
SS confidence 
Disorder 
?
??
?
Disorder confidence 
 
   .........250.........
Sequence  LASLLKALGHGDGKSASSY
Secondary structure 
SS confidence 
Disorder 
??????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1p1x chain A

3D model

Region: 1 - 250
Aligned: 250
Modelled: 250
Confidence: 100.0%
Identity: 100%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 3qyq chain C

3D model

Region: 3 - 253
Aligned: 248
Modelled: 251
Confidence: 100.0%
Identity: 25%
PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase, putative;
PDBTitle: 1.8 angstrom resolution crystal structure of a putative deoxyribose-2 phosphate aldolase from toxoplasma gondii me49

Phyre2

PDB 2a4a chain A domain 1

3D model

Region: 5 - 248
Aligned: 238
Modelled: 244
Confidence: 100.0%
Identity: 34%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 2a4a chain B

3D model

Region: 5 - 248
Aligned: 235
Modelled: 244
Confidence: 100.0%
Identity: 34%
PDB header:lyase
Chain: B: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: deoxyribose-phosphate aldolase from p. yoelii

Phyre2

PDB 1o0y chain A

3D model

Region: 9 - 252
Aligned: 219
Modelled: 232
Confidence: 100.0%
Identity: 30%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 3oa3 chain A

3D model

Region: 10 - 248
Aligned: 217
Modelled: 227
Confidence: 100.0%
Identity: 29%
PDB header:lyase
Chain: A: PDB Molecule:aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis

Phyre2

PDB 1mzh chain A

3D model

Region: 11 - 251
Aligned: 214
Modelled: 229
Confidence: 100.0%
Identity: 28%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 3ngj chain C

3D model

Region: 9 - 246
Aligned: 213
Modelled: 223
Confidence: 100.0%
Identity: 34%
PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica

Phyre2

PDB 1ub3 chain A

3D model

Region: 11 - 244
Aligned: 209
Modelled: 222
Confidence: 100.0%
Identity: 33%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 1vcv chain A domain 1

3D model

Region: 11 - 244
Aligned: 216
Modelled: 234
Confidence: 100.0%
Identity: 31%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 3ng3 chain A

3D model

Region: 9 - 246
Aligned: 210
Modelled: 226
Confidence: 100.0%
Identity: 35%
PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde

Phyre2

PDB 1n7k chain A

3D model

Region: 7 - 250
Aligned: 218
Modelled: 232
Confidence: 100.0%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 3gnd chain C

3D model

Region: 15 - 235
Aligned: 188
Modelled: 208
Confidence: 99.5%
Identity: 15%
PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate

Phyre2

PDB 1uum chain A

3D model

Region: 50 - 241
Aligned: 169
Modelled: 180
Confidence: 98.3%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 2fpt chain A

3D model

Region: 52 - 241
Aligned: 163
Modelled: 176
Confidence: 98.3%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors

Phyre2

PDB 1d3g chain A

3D model

Region: 66 - 241
Aligned: 155
Modelled: 164
Confidence: 98.2%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1ojx chain A

3D model

Region: 28 - 235
Aligned: 179
Modelled: 200
Confidence: 98.2%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: Aldolase
Family: Class I aldolase

Phyre2

PDB 1f76 chain A

3D model

Region: 53 - 241
Aligned: 171
Modelled: 177
Confidence: 98.2%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 1vhn chain A

3D model

Region: 84 - 241
Aligned: 133
Modelled: 158
Confidence: 98.1%
Identity: 17%
Fold: TIM beta/alpha-barrel
Superfamily: FMN-linked oxidoreductases
Family: FMN-linked oxidoreductases

Phyre2

PDB 3q58 chain A

3D model

Region: 21 - 250
Aligned: 190
Modelled: 197
Confidence: 98.1%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica

Phyre2
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d1p1xa_
2
c3qyqC_
3
d2a4aa1
4
c2a4aB_
5
d1o0ya_
6
c3oa3A_
7
d1mzha_
8
c3ngjC_
9
d1ub3a_
10
d1vcva1
11
c3ng3A_
12
d1n7ka_
13
c3gndC_
14
d1uuma_
15
c2fptA_
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d1d3ga_
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d1ojxa_
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d1f76a_
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d1vhna_
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c3q58A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1p1xa_
100.0 100 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
2c3qyqC_
100.0 25 PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase, putative;
PDBTitle: 1.8 angstrom resolution crystal structure of a putative deoxyribose-2 phosphate aldolase from toxoplasma gondii me49
3d2a4aa1
100.0 34 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
4c2a4aB_
100.0 34 PDB header:lyase
Chain: B: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: deoxyribose-phosphate aldolase from p. yoelii
5d1o0ya_
100.0 30 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
6c3oa3A_
100.0 29 PDB header:lyase
Chain: A: PDB Molecule:aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis
7d1mzha_
100.0 28 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
8c3ngjC_
100.0 34 PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
9d1ub3a_
100.0 33 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
10d1vcva1
100.0 31 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
11c3ng3A_
100.0 35 PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde
12d1n7ka_
100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
13c3gndC_
99.5 15 PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
14d1uuma_
98.3 19 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
15c2fptA_
98.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial;
PDBTitle: dual binding mode of a novel series of dhodh inhibitors
16d1d3ga_
98.2 20 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
17d1ojxa_
98.2 17 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
18d1f76a_
98.2 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
19d1vhna_
98.1 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
20c3q58A_
98.1 15 PDB header:isomerase
Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase;
PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
21c2qjhH_
not modelled 98.0 19 PDB header:lyase
Chain: H: PDB Molecule:putative aldolase mj0400;
PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate
22c3hf3A_
not modelled 98.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:chromate reductase;
PDBTitle: old yellow enzyme from thermus scotoductus sa-01
23c2h90A_
not modelled 97.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:xenobiotic reductase a;
PDBTitle: xenobiotic reductase a in complex with coumarin
24c3b0vD_
not modelled 97.9 19 PDB header:oxidoreductase/rna
Chain: D: PDB Molecule:trna-dihydrouridine synthase;
PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna
25d1kbia1
not modelled 97.9 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
26d1yxya1
not modelled 97.9 12 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
27c3gr7A_
not modelled 97.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph dehydrogenase;
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
28d1vrda1
not modelled 97.9 27 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
29d1juba_
not modelled 97.8 12 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
30d1ps9a1
not modelled 97.8 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
31d1wbha1
not modelled 97.8 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
32d1ofda2
not modelled 97.8 22 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
33c3r2gA_
not modelled 97.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine 5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine 5' monophosphate dehydrogenase from2 legionella pneumophila
34c3igsB_
not modelled 97.8 16 PDB header:isomerase
Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2;
PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
35c2a7rD_
not modelled 97.7 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:gmp reductase 2;
PDBTitle: crystal structure of human guanosine monophosphate2 reductase 2 (gmpr2)
36d1eepa_
not modelled 97.7 22 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
37c3ffsC_
not modelled 97.7 21 PDB header:oxidoreductase
Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase
38d1vhca_
not modelled 97.7 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
39c2jbmA_
not modelled 97.7 21 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: qprtase structure from human
40c1zfjA_
not modelled 97.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes
41d1ea0a2
not modelled 97.6 22 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
42c3kruC_
not modelled 97.6 17 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase;
PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39
43c1ypfB_
not modelled 97.6 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:gmp reductase;
PDBTitle: crystal structure of guac (ba5705) from bacillus anthracis at 1.8 a2 resolution
44d1vyra_
not modelled 97.6 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
45c1kbiB_
not modelled 97.6 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b2;
PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme
46c1djnB_
not modelled 97.6 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:trimethylamine dehydrogenase;
PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1)
47d1y0ea_
not modelled 97.6 11 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:NanE-like
48c2e77B_
not modelled 97.6 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate oxidase;
PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex
49c3khjE_
not modelled 97.5 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase;
PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64
50d2b4ga1
not modelled 97.5 12 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
51d1to3a_
not modelled 97.5 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
52c1vrdA_
not modelled 97.5 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase (tm1347)2 from thermotoga maritima at 2.18 a resolution
53c1ps9A_
not modelled 97.5 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,4-dienoyl-coa reductase;
PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase
54d1mxsa_
not modelled 97.5 14 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
55d1qapa1
not modelled 97.5 17 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
56c1o4uA_
not modelled 97.5 20 PDB header:transferase
Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase;
PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution
57d1jr1a1
not modelled 97.5 19 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
58c2rduA_
not modelled 97.5 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyacid oxidase 1;
PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate
59c2v82A_
not modelled 97.5 21 PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase;
PDBTitle: kdpgal complexed to kdpgal
60d1djqa1
not modelled 97.4 13 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
61c3qjaA_
not modelled 97.4 21 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
62c1jcnA_
not modelled 97.4 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i;
PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp
63d1goxa_
not modelled 97.4 22 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
64c1qapA_
not modelled 97.4 20 PDB header:glycosyltransferase
Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase;
PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid
65d1z41a1
not modelled 97.4 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
66d1jcna1
not modelled 97.3 21 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
67d1xcfa_
not modelled 97.3 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
68c2c3zA_
not modelled 97.3 16 PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
69d1zfja1
not modelled 97.3 23 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
70c3oixA_
not modelled 97.2 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative dihydroorotate dehydrogenase; dihydroorotate
PDBTitle: crystal structure of the putative dihydroorotate dehydrogenase from2 streptococcus mutans
71c3atyA_
not modelled 97.2 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:prostaglandin f2a synthase;
PDBTitle: crystal structure of tcoye
72d1rd5a_
not modelled 97.2 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
73d1a53a_
not modelled 97.2 20 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
74d1p0ka_
not modelled 97.2 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
75c3pajA_
not modelled 97.1 19 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating;
PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961
76d1tb3a1
not modelled 97.1 26 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
77d1o4ua1
not modelled 97.1 21 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
78c2cdh1_
not modelled 97.1 24 PDB header:transferase
Chain: 1: PDB Molecule:enoyl reductase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
79c2gq8A_
not modelled 97.1 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone
80c2yw3E_
not modelled 97.1 25 PDB header:lyase
Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-
PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1
81c2b7pA_
not modelled 97.1 19 PDB header:transferase
Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori
82c3ivuB_
not modelled 97.1 19 PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
83d1pvna1
not modelled 97.0 16 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
84c1tv5A_
not modelled 97.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase homolog, mitochondrial;
PDBTitle: plasmodium falciparum dihydroorotate dehydrogenase with a bound2 inhibitor
85d1tv5a1
not modelled 97.0 18 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
86d1ep3a_
not modelled 96.9 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
87c1gthD_
not modelled 96.9 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil
88c3l0gD_
not modelled 96.7 9 PDB header:transferase
Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution
89d1vc4a_
not modelled 96.7 17 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
90c3k30B_
not modelled 96.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:histamine dehydrogenase;
PDBTitle: histamine dehydrogenase from nocardiodes simplex
91c1qpoA_
not modelled 96.7 13 PDB header:transferase
Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase;
PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis
92d2cu0a1
not modelled 96.7 19 Fold:TIM beta/alpha-barrel
Superfamily:Inosine monophosphate dehydrogenase (IMPDH)
Family:Inosine monophosphate dehydrogenase (IMPDH)
93d1wa3a1
not modelled 96.7 20 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
94c2htmB_
not modelled 96.7 9 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiazole biosynthesis protein thig;
PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8
95d1gtea2
not modelled 96.6 16 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
96d1geqa_
not modelled 96.6 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
97d1qpoa1
not modelled 96.6 14 Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:NadC C-terminal domain-like
98c3fokH_
not modelled 96.6 17 PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:uncharacterized protein cgl0159;
PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115
99c3tqvA_
not modelled 96.5 19 PDB header:transferase
Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: structure of the nicotinate-nucleotide pyrophosphorylase from2 francisella tularensis.
100c1lm1A_
not modelled 96.5 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase;
PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme
101c1x1oC_
not modelled 96.4 24 PDB header:transferase
Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase;
PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8
102d1p4ca_
not modelled 96.4 21 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
103c2vdcF_
not modelled 96.3 23 PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate synthase [nadph] large chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.
104d1vjia_
not modelled 96.3 23 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
105c2a7nA_
not modelled 96.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase;
PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase
106c2ftpA_
not modelled 96.3 16 PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa
107d1vcfa1
not modelled 96.2 17 Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
108c3labA_
not modelled 96.2 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate)
PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica
109d1xi3a_
not modelled 96.2 15 Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
110c3gkaB_
not modelled 96.1 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei
111d1piia2
not modelled 96.1 16 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
112c1znnF_
not modelled 96.1 19 PDB header:biosynthetic protein
Chain: F: PDB Molecule:plp synthase;
PDBTitle: structure of the synthase subunit of plp synthase
113c3bg3B_
not modelled 96.0 12 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase, mitochondrial;
PDBTitle: crystal structure of human pyruvate carboxylase (missing2 the biotin carboxylase domain at the n-terminus)
114c1me9A_
not modelled 96.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: inosine monophosphate dehydrogenase (impdh) from2 tritrichomonas foetus with imp bound
115c2nx9B_
not modelled 96.0 13 PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
116d1znna1
not modelled 95.9 19 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:PdxS-like
117d1j5ta_
not modelled 95.9 12 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
118d1i4na_
not modelled 95.3 10 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
119c2cu0B_
not modelled 95.3 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:inosine-5'-monophosphate dehydrogenase;
PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase from2 pyrococcus horikoshii ot3
120d1h1ya_
not modelled 95.2 13 Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:D-ribulose-5-phosphate 3-epimerase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0