Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A7B3
DateThu Jan 5 11:05:16 GMT 2012
Unique Job ID3f01432b21e03a33

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3afoB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
Confidence and coverage
Confidence:100.0% Coverage: 99%
288 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEI
Secondary structure 





















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Disorder  ?????















































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   .........70.........80.........90.........100.........110.........120
Sequence  GQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLTDLDPDNAQQQLADVLEGH
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   .........130.........140.........150.........160.........170.........180
Sequence  YISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMIEFEVYIDEIFAFSQRSDGLI
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   .........190.........200.........210.........220.........230.........240
Sequence  ISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIRLRFSHRRNDL
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?








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   .........250.........260.........270.........280.........290..
Sequence  EISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTLSTKLGWSKKLF
Secondary structure 




















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???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3afo chain B

3D model

Region: 2 - 291
Aligned: 288
Modelled: 290
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh

Phyre2

PDB 3pfn chain B

3D model

Region: 2 - 287
Aligned: 280
Modelled: 283
Confidence: 100.0%
Identity: 30%
PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase

Phyre2

PDB 2an1 chain D

3D model

Region: 4 - 292
Aligned: 268
Modelled: 289
Confidence: 100.0%
Identity: 96%
PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2

Phyre2

PDB 1u0t chain A

3D model

Region: 6 - 290
Aligned: 263
Modelled: 263
Confidence: 100.0%
Identity: 30%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: NAD kinase-like

Phyre2

PDB 1yt5 chain A

3D model

Region: 5 - 290
Aligned: 256
Modelled: 266
Confidence: 100.0%
Identity: 29%
PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima

Phyre2

PDB 2i2a chain A

3D model

Region: 7 - 285
Aligned: 252
Modelled: 257
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes

Phyre2

PDB 1z0s chain A domain 1

3D model

Region: 7 - 286
Aligned: 245
Modelled: 266
Confidence: 100.0%
Identity: 26%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: NAD kinase-like

Phyre2

PDB 1z0z chain C

3D model

Region: 7 - 286
Aligned: 245
Modelled: 266
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad

Phyre2

PDB 2qv7 chain A domain 1

3D model

Region: 6 - 276
Aligned: 260
Modelled: 264
Confidence: 99.6%
Identity: 14%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 2qv7 chain A

3D model

Region: 6 - 275
Aligned: 259
Modelled: 263
Confidence: 99.5%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg

Phyre2

PDB 3s40 chain C

3D model

Region: 3 - 273
Aligned: 248
Modelled: 271
Confidence: 99.5%
Identity: 16%
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne

Phyre2

PDB 2p1r chain A domain 1

3D model

Region: 2 - 274
Aligned: 251
Modelled: 264
Confidence: 99.5%
Identity: 12%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 2bon chain A domain 1

3D model

Region: 7 - 275
Aligned: 257
Modelled: 265
Confidence: 99.4%
Identity: 14%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 2bon chain B

3D model

Region: 7 - 274
Aligned: 243
Modelled: 260
Confidence: 99.4%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)

Phyre2

PDB 2jgr chain A domain 1

3D model

Region: 5 - 208
Aligned: 196
Modelled: 200
Confidence: 99.3%
Identity: 13%
Fold: NAD kinase/diacylglycerol kinase-like
Superfamily: NAD kinase/diacylglycerol kinase-like
Family: Diacylglycerol kinase-like

Phyre2

PDB 3opy chain E

3D model

Region: 1 - 131
Aligned: 129
Modelled: 131
Confidence: 97.7%
Identity: 17%
PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state

Phyre2

PDB 4pfk chain A

3D model

Region: 5 - 131
Aligned: 124
Modelled: 127
Confidence: 97.5%
Identity: 23%
Fold: Phosphofructokinase
Superfamily: Phosphofructokinase
Family: Phosphofructokinase

Phyre2

PDB 1pfk chain A

3D model

Region: 5 - 117
Aligned: 110
Modelled: 113
Confidence: 97.3%
Identity: 23%
Fold: Phosphofructokinase
Superfamily: Phosphofructokinase
Family: Phosphofructokinase

Phyre2

PDB 3opy chain G

3D model

Region: 2 - 131
Aligned: 128
Modelled: 130
Confidence: 97.2%
Identity: 18%
PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state

Phyre2

PDB 1zxx chain A

3D model

Region: 5 - 116
Aligned: 109
Modelled: 112
Confidence: 97.2%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii

Phyre2
1

c3afoB_
2

c3pfnB_
3

c2an1D_
4

d1u0ta_
5

c1yt5A_
6

c2i2aA_
7

d1z0sa1
8

c1z0zC_
9

d2qv7a1
10

c2qv7A_
11

c3s40C_
12

d2p1ra1
13

d2bona1
14

c2bonB_
15

d2jgra1
16

c3opyE_
17

d4pfka_
18

d1pfka_
19

c3opyG_
20

c1zxxA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3afoB_



100.0 27 PDB header:transferase
Chain: B: PDB Molecule:nadh kinase pos5;
PDBTitle: crystal structure of yeast nadh kinase complexed with nadh
2c3pfnB_



100.0 30 PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
3c2an1D_



100.0 96 PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
4d1u0ta_



100.0 30 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
5c1yt5A_



100.0 29 PDB header:transferase
Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of nad kinase from thermotoga maritima
6c2i2aA_



100.0 23 PDB header:transferase
Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1;
PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
7d1z0sa1



100.0 26 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
8c1z0zC_



100.0 26 PDB header:transferase
Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase;
PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
9d2qv7a1



99.6 14 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
10c2qv7A_



99.5 14 PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
11c3s40C_



99.5 16 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
12d2p1ra1



99.5 12 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
13d2bona1



99.4 14 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
14c2bonB_



99.4 14 PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
15d2jgra1



99.3 13 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
16c3opyE_



97.7 17 PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
17d4pfka_



97.5 23 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
18d1pfka_



97.3 23 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
19c3opyG_



97.2 18 PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
20c1zxxA_



97.2 25 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
21c3opyH_



not modelled 97.1 20 PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
22d1vlja_



not modelled 97.1 15 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
23c3o8oC_



not modelled 97.1 16 PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
24c3o8nA_



not modelled 97.0 15 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase, muscle type;
PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle
25c3ox4D_



not modelled 96.8 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
26d1rrma_



not modelled 96.6 16 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
27c3bfjK_



not modelled 96.4 21 PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
28c3okfA_



not modelled 96.3 15 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
29c3o8oB_



not modelled 96.3 17 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
30c3opyB_



not modelled 96.2 22 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
31d1o2da_



not modelled 96.2 17 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
32d1jq5a_



not modelled 96.1 14 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
33c3ce9A_



not modelled 95.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
34d1oj7a_



not modelled 95.5 20 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
35c2higA_



not modelled 95.4 35 PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
36c3k2qA_



not modelled 95.3 24 PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
37c3clhA_



not modelled 95.2 15 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori
38c3hl0B_



not modelled 95.1 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:maleylacetate reductase;
PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens
39c3jzdA_



not modelled 95.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase;
PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution
40c3nvaB_



not modelled 94.9 21 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
41c1ta9A_



not modelled 94.9 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
42d1o1ya_



not modelled 94.9 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
43c2o6lA_



not modelled 94.8 14 PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
44d2nv0a1



not modelled 94.7 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
45d1y81a1



not modelled 94.5 24 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
46c2gruB_



not modelled 94.5 17 PDB header:lyase
Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase;
PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+
47d1a9xb2



not modelled 94.2 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
48d2f48a1



not modelled 94.1 19 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
49c2issF_



not modelled 93.6 25 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
50d1sg6a_



not modelled 93.0 7 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
51c1jvnB_



not modelled 93.0 20 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
52c3l7nA_



not modelled 92.4 17 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
53c1tvmA_



not modelled 92.2 15 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
54c3r74B_



not modelled 92.2 24 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
55c3d54D_



not modelled 92.2 20 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
56d1ujna_



not modelled 92.1 16 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Dehydroquinate synthase, DHQS
57c1sy7B_



not modelled 92.1 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
58c2ad5B_



not modelled 92.0 27 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
59d1vcoa1



not modelled 91.8 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
60d1qdlb_



not modelled 91.6 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
61c3fijD_



not modelled 91.0 25 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
62c3iv7B_



not modelled 90.7 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:alcohol dehydrogenase iv;
PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution
63d1q7ra_



not modelled 90.4 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
64c1keeH_



not modelled 90.3 23 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
65c2v4uA_



not modelled 90.2 21 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
66c1vcnA_



not modelled 90.0 28 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
67d1s1ma1



not modelled 89.9 28 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
68d1wl8a1



not modelled 89.9 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
69c2w7tA_



not modelled 89.7 18 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
70c1xahA_



not modelled 89.6 20 PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+
71d1iira_



not modelled 88.9 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
72c2hnbA_



not modelled 88.9 17 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
73c3l4eA_



not modelled 88.8 23 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
74c2q4dB_



not modelled 88.8 28 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950
75d1ka9h_



not modelled 88.7 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
76d1p80a1



not modelled 88.6 10 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
77d1pn3a_



not modelled 88.5 18 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
78c3hdvB_



not modelled 87.8 14 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
79c3uhjE_



not modelled 87.7 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:probable glycerol dehydrogenase;
PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021
80d2acva1



not modelled 87.6 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
81c3dnfB_



not modelled 87.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase;
PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway
82c3crnA_



not modelled 87.5 21 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
83d1fyea_



not modelled 87.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
84c3jteA_



not modelled 87.0 15 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
85c2duwA_



not modelled 87.0 20 PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
86c3rggD_



not modelled 86.9 15 PDB header:lyase
Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein;
PDBTitle: crystal structure of treponema denticola pure bound to air
87c3hbjA_



not modelled 86.8 16 PDB header:transferase
Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase;
PDBTitle: structure of ugt78g1 complexed with udp
88d1jvna2



not modelled 86.7 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
89d2vcha1



not modelled 86.5 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
90d1ydha_



not modelled 86.3 28 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
91d2c1xa1



not modelled 86.2 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
92d1oi4a1



not modelled 86.1 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
93d2pq6a1



not modelled 86.0 9 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
94d1rrva_



not modelled 85.6 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
95d1gpma2



not modelled 85.5 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
96d2d59a1



not modelled 85.2 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
97c2jzcA_



not modelled 84.8 16 PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit
PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1
98d1zl0a2



not modelled 84.6 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
99d2a9va1



not modelled 84.2 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
100d2q4oa1



not modelled 84.1 28 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
101c2q4oA_



not modelled 84.1 28 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210
102c2ywjA_



not modelled 84.0 22 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
103d1dbwa_



not modelled 83.5 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
104d1kq3a_



not modelled 83.1 27 Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
105c3h5lB_



not modelled 82.9 10 PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc
PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi
106d1p6qa_



not modelled 82.8 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
107d1b1ca_



not modelled 82.8 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
108c2hqoA_



not modelled 82.7 13 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
109c2vpiA_



not modelled 82.6 14 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
110c3f6sI_



not modelled 82.6 17 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
111c3eeqB_



not modelled 82.5 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g
PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus
112c3czcA_



not modelled 82.4 11 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
113c3l83A_



not modelled 81.9 21 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
114d1o4va_



not modelled 81.9 19 Fold:Flavodoxin-like
Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
115c1rcuB_



not modelled 81.6 26 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein vt76;
PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76
116d1rcua_



not modelled 81.6 26 Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
117c3f5dA_



not modelled 81.0 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
118c3eafA_



not modelled 80.9 8 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein;
PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
119d1iiba_



not modelled 80.8 18 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
120d1ycga1



not modelled 80.4 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0