Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	I	L	K	S	L	F	T	L	G	K	S	F	I	S	Q	A	E	E	S	I	E	E	T	Q	G	V	R	M	L	E	Q	H	I	R	D	A	K	A	E	L	D	K	A	G	K	S	R	V	D	L	L	A	R	V	K	L	S	H
Secondary structure
SS confidence
Disorder		?	?																					?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	K	L	K	D	L	R	E	R	K	A	S	L	E	A	R	A	L	E	A	L	S	K	N	V	N	P	S	L	I	N	E	V	A	E	E	I	A	R	L	E	N	L	I	T	A	E	E	Q	V	L	S	N	L	E	V	S	R	D	G
Secondary structure
SS confidence
Disorder																								?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	E	K	A	V	T	A	T	A	Q	R	I	A	Q	F	E	Q	Q	M	E	V	V	K	A	T	E	A	M	Q	R	A	Q	Q	A	V	T	T	S	T	V	G	A	S	S	S	V	S	T	A	A	E	S	L	K	R	L	Q	T	R	Q
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence		A	E	R	Q	A	R	L	D	A	A	A	Q	L	E	K	V	A	D	G	R	D	L	D	E	K	L	A	E	A	G	I	G	G	S	N	K	S	S	A	Q	D	V	L	A	R	L	Q	R	Q	Q	G	E
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?								?	?	?	?	?	?	?	?	?	?										?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1y4c chain A Region: 29 - 169 Aligned: 141 Modelled: 141 Confidence: 75.4% Identity: 9% PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Phyre2 PDB 3oja chain B Region: 28 - 172 Aligned: 143 Modelled: 145 Confidence: 72.9% Identity: 14% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 2fxm chain B Region: 31 - 145 Aligned: 109 Modelled: 115 Confidence: 70.7% Identity: 12% PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment Phyre2 PDB 3u59 chain C Region: 25 - 130 Aligned: 100 Modelled: 106 Confidence: 66.9% Identity: 12% PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta Phyre2 PDB 2efr chain B Region: 28 - 183 Aligned: 150 Modelled: 156 Confidence: 66.3% Identity: 11% PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution Phyre2 PDB 2d3e chain D Region: 28 - 149 Aligned: 122 Modelled: 122 Confidence: 53.6% Identity: 16% PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin Phyre2 PDB 2y3a chain B Region: 31 - 152 Aligned: 119 Modelled: 122 Confidence: 40.2% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta; PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941 Phyre2 PDB 1deq chain F Region: 29 - 132 Aligned: 102 Modelled: 104 Confidence: 37.3% Identity: 11% PDB header: PDB COMPND: Phyre2 PDB 4a55 chain B Region: 28 - 152 Aligned: 125 Modelled: 125 Confidence: 35.6% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108 Phyre2 PDB 3cvf chain A Region: 17 - 82 Aligned: 66 Modelled: 66 Confidence: 34.4% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 Phyre2 PDB 2b9c chain A Region: 28 - 146 Aligned: 119 Modelled: 119 Confidence: 30.8% Identity: 12% PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin Phyre2 PDB 3ghg chain K Region: 26 - 125 Aligned: 99 Modelled: 100 Confidence: 27.3% Identity: 8% PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen Phyre2 PDB 3ol1 chain A Region: 29 - 133 Aligned: 99 Modelled: 105 Confidence: 25.4% Identity: 12% PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b Phyre2 PDB 1ei3 chain E Region: 11 - 125 Aligned: 112 Modelled: 115 Confidence: 25.1% Identity: 10% PDB header: PDB COMPND: Phyre2 PDB 1l8d chain B Region: 31 - 132 Aligned: 101 Modelled: 102 Confidence: 23.6% Identity: 11% PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook Phyre2 PDB 3hiz chain B Region: 31 - 154 Aligned: 124 Modelled: 124 Confidence: 22.8% Identity: 13% PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha Phyre2 PDB 3ipk chain A Region: 25 - 135 Aligned: 106 Modelled: 106 Confidence: 20.3% Identity: 11% PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans Phyre2 PDB 2rd0 chain B Region: 28 - 147 Aligned: 119 Modelled: 120 Confidence: 19.4% Identity: 9% PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex Phyre2 PDB 3cve chain C Region: 29 - 82 Aligned: 54 Modelled: 54 Confidence: 19.3% Identity: 15% PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 Phyre2 PDB 3o0z chain D Region: 26 - 182 Aligned: 151 Modelled: 157 Confidence: 16.8% Identity: 11% PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i Phyre2 1 c1y4cA_ 2 c3ojaB_ 3 c2fxmB_ 4 c3u59C_ 5 c2efrB_ 6 c2d3eD_ 7 c2y3aB_ 8 c1deqF_ 9 c4a55B_ 10 c3cvfA_ 11 c2b9cA_ 12 c3ghgK_ 13 c3ol1A_ 14 c1ei3E_ 15 c1l8dB_ 16 c3hizB_ 17 c3ipkA_ 18 c2rd0B_ 19 c3cveC_ 20 c3o0zD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1y4cA_ 75.4 9 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 2 c3ojaB_ 72.9 14 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 3 c2fxmB_ 70.7 12 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 4 c3u59C_ 66.9 12 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 5 c2efrB_ 66.3 11 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 6 c2d3eD_ 53.6 16 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 7 c2y3aB_ 40.2 13 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta; PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941 8 c1deqF_ 37.3 11 PDB header: PDB COMPND: 9 c4a55B_ 35.6 13 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108 10 c3cvfA_ 34.4 15 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 11 c2b9cA_ 30.8 12 PDB header:contractile protein Chain: A: PDB Molecule:striated-muscle alpha tropomyosin; PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin 12 c3ghgK_ 27.3 8 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 13 c3ol1A_ 25.4 12 PDB header:structural protein Chain: A: PDB Molecule:vimentin; PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b 14 c1ei3E_ 25.1 10 PDB header: PDB COMPND: 15 c1l8dB_ 23.6 11 PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: rad50 coiled-coil zn hook 16 c3hizB_ 22.8 13 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 17 c3ipkA_ 20.3 11 PDB header:cell adhesion Chain: A: PDB Molecule:agi/ii; PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans 18 c2rd0B_ 19.4 9 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a human p110alpha/p85alpha complex 19 c3cveC_ 19.3 15 PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 20 c3o0zD_ 16.8 11 PDB header:transferase Chain: D: PDB Molecule:rho-associated protein kinase 1; PDBTitle: crystal structure of a coiled-coil domain from human rock i 21 c2gl2B_ not modelled 16.2 18 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 22 c2v71A_ not modelled 16.1 13 PDB header:nuclear protein Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: coiled-coil region of nudel 23 c3dtpA_ not modelled 15.8 13 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 24 c3na7A_ not modelled 15.5 8 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 25 c3ojaA_ not modelled 14.6 9 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 26 c3a5tB_ not modelled 14.5 15 PDB header:transcription regulator/dna Chain: B: PDB Molecule:transcription factor mafg; PDBTitle: crystal structure of mafg-dna complex 27 c3cwgA_ not modelled 13.6 11 PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment 28 c1deqO_ not modelled 13.0 8 PDB header: PDB COMPND: 29 c3u1aC_ not modelled 11.8 19 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 30 c3ajwA_ not modelled 11.5 15 PDB header:protein transport Chain: A: PDB Molecule:flagellar flij protein; PDBTitle: structure of flij, a soluble component of flagellar type iii export2 apparatus 31 c1c1gA_ not modelled 11.5 16 PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form 32 d2obpa1 not modelled 11.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ReutB4095-like 33 c1ei3C_ not modelled 11.0 21 PDB header: PDB COMPND: 34 c2jziB_ not modelled 11.0 18 PDB header:metal binding protein Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2b PDBTitle: structure of calmodulin complexed with the calmodulin2 binding domain of calcineurin 35 c2v66C_ not modelled 10.8 13 PDB header:structural protein Chain: C: PDB Molecule:nuclear distribution protein nude-like 1; PDBTitle: crystal structure of the coiled-coil domain of ndel1 (a.a.2 58 to 169)c 36 c1jchC_ not modelled 10.6 10 PDB header:ribosome inhibitor, hydrolase Chain: C: PDB Molecule:colicin e3; PDBTitle: crystal structure of colicin e3 in complex with its immunity protein 37 c1ic2B_ not modelled 10.5 18 PDB header:contractile protein Chain: B: PDB Molecule:tropomyosin alpha chain, skeletal muscle; PDBTitle: deciphering the design of the tropomyosin molecule 38 c1g8xB_ not modelled 10.4 13 PDB header:structural protein Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3; PDBTitle: structure of a genetically engineered molecular motor 39 c3m9bK_ not modelled 10.2 24 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 40 c2wt7B_ not modelled 10.2 14 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 41 d1vmaa1 not modelled 9.9 21 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 42 c2z2qF_ not modelled 9.8 18 PDB header:virus/rna Chain: F: PDB Molecule:coat protein gamma; PDBTitle: crystal structure of flock house virus 43 c1deqD_ not modelled 9.5 13 PDB header: PDB COMPND: 44 d1kbha_ not modelled 9.5 24 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 45 c1fosE_ not modelled 9.3 12 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 46 c3hnwB_ not modelled 9.3 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 47 d1xvha1 not modelled 9.3 16 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Bacterial immunoglobulin/albumin-binding domains Family:GA module, an albumin-binding domain 48 c1fosF_ not modelled 9.1 15 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 49 c2xdjF_ not modelled 9.0 7 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 50 d1z0kb1 not modelled 8.8 31 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 51 c2oevA_ not modelled 8.8 13 PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 52 c2v1yB_ not modelled 8.6 9 PDB header:transferase Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha; PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha 53 c2k10A_ not modelled 8.5 26 PDB header:antimicrobial protein Chain: A: PDB Molecule:ranatuerin-2csa; PDBTitle: confirmational analysis of the broad-spectrum antibacterial2 peptide, rantuerin-2csa: identification of a full length3 helix-turn-helix motif 54 d1yzma1 not modelled 8.4 31 Fold:Long alpha-hairpin Superfamily:Rabenosyn-5 Rab-binding domain-like Family:Rabenosyn-5 Rab-binding domain-like 55 c2x7aB_ not modelled 8.4 11 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 56 c3n4xB_ not modelled 8.4 14 PDB header:replication Chain: B: PDB Molecule:monopolin complex subunit csm1; PDBTitle: structure of csm1 full-length 57 c2dohC_ not modelled 8.3 40 PDB header:hydrolase Chain: C: PDB Molecule:plasminogen-binding group a streptococcal m-like protein PDBTitle: the x-ray crystallographic structure of the angiogenesis inhibitor,2 angiostatin, bound a to a peptide from the group a streptococcal3 surface protein pam 58 c1t2kD_ not modelled 8.3 15 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 59 d2c52b1 not modelled 8.2 15 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 60 c2doiB_ not modelled 8.2 40 PDB header:hydrolase Chain: B: PDB Molecule:plasminogen-binding group a streptococcal m-like protein PDBTitle: the x-ray crystallographic structure of the angiogenesis inhibitor,2 angiostatin, bound to a peptide from the group a streptococcus3 protein pam 61 c2doiC_ not modelled 8.2 40 PDB header:hydrolase Chain: C: PDB Molecule:plasminogen-binding group a streptococcal m-like protein PDBTitle: the x-ray crystallographic structure of the angiogenesis inhibitor,2 angiostatin, bound to a peptide from the group a streptococcus3 protein pam 62 c1i5kD_ not modelled 8.1 40 PDB header:blood clotting Chain: D: PDB Molecule:m protein; PDBTitle: structure and binding determinants of the recombinant kringle-2 domain2 of human plasminogen to an internal peptide from a group a3 streptococcal surface protein 63 c1i5kC_ not modelled 8.1 40 PDB header:blood clotting Chain: C: PDB Molecule:m protein; PDBTitle: structure and binding determinants of the recombinant kringle-2 domain2 of human plasminogen to an internal peptide from a group a3 streptococcal surface protein 64 c1bg1A_ not modelled 8.1 15 PDB header:transcription/dna Chain: A: PDB Molecule:protein (transcription factor stat3b); PDBTitle: transcription factor stat3b/dna complex 65 d1k8ib2 not modelled 8.0 19 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 66 c1ci6A_ not modelled 7.9 6 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 67 c2kj4B_ not modelled 7.5 40 PDB header:blood clotting Chain: B: PDB Molecule:vek-30; PDBTitle: solution structure of the complex of vek-30 and plasminogen2 kringle 2 68 c1junB_ not modelled 7.4 24 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 69 d2gqba1 not modelled 7.4 18 Fold:RPA2825-like Superfamily:RPA2825-like Family:RPA2825-like 70 c1uo3B_ not modelled 7.4 36 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 71 c1u9fC_ not modelled 7.3 36 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 72 c1u9fB_ not modelled 7.3 36 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 73 c1vmaA_ not modelled 7.3 13 PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution 74 c1o8tA_ not modelled 7.3 19 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein c-ii; PDBTitle: global structure and dynamics of human apolipoprotein cii2 in complex with micelles: evidence for increased mobility3 of the helix involvved in the activation of lipoprotein4 lipase. 75 c1unuA_ not modelled 7.3 36 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 76 c1unuB_ not modelled 7.3 36 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 77 c1uo5A_ not modelled 7.2 36 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 78 c1uo5B_ not modelled 7.2 36 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 79 c2kxoA_ not modelled 7.2 38 PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae 80 c1u9fD_ not modelled 7.1 36 PDB header:transcription Chain: D: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 81 c1yybA_ not modelled 7.1 50 PDB header:apoptosis Chain: A: PDB Molecule:programmed cell death protein 5; PDBTitle: solution structure of 1-26 fragment of human programmed2 cell death 5 protein 82 c1gd2G_ not modelled 7.1 13 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 83 c1untA_ not modelled 7.0 36 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 84 c2kesA_ not modelled 7.0 16 PDB header:protein binding Chain: A: PDB Molecule:synphilin-1; PDBTitle: solution structure of the coiled-coil domain of synphilin-1 85 c1m1jA_ not modelled 7.0 10 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 86 c1untB_ not modelled 6.9 36 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 87 d1fxkc_ not modelled 6.8 9 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 88 c3a7pB_ not modelled 6.7 15 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 89 c3jqhA_ not modelled 6.7 45 PDB header:sugar binding protein Chain: A: PDB Molecule:c-type lectin domain family 4 member m; PDBTitle: structure of the neck region of the glycan-binding receptor2 dc-signr 90 c2cceB_ not modelled 6.5 36 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 91 c2cceA_ not modelled 6.5 36 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: parallel configuration of pli e20s 92 c1gk4A_ not modelled 6.5 18 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 93 c3kltB_ not modelled 6.5 11 PDB header:structural protein Chain: B: PDB Molecule:vimentin; PDBTitle: crystal structure of a vimentin fragment 94 d2auwa1 not modelled 6.4 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 95 c2eqbC_ not modelled 6.4 17 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex 96 d1fxka_ not modelled 6.4 11 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 97 c3qh9A_ not modelled 6.1 13 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 98 c1unvA_ not modelled 6.1 38 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 99 c2e7sM_ not modelled 6.1 15 PDB header:endocytosis/exocytosis Chain: M: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the yeast sec2p gef domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0