Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	W	F	N	T	L	S	H	N	R	W	L	E	Q	E	T	D	R	I	F	D	F	G	K	N	S	V	V	P	T	G	F	G	W	L	G	N	K	G	Q	I	K	E	E	M	G	T	H	L	W	I	T	A	R	M	L	H	V	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	A	A	A	M	G	R	P	G	A	Y	S	L	V	D	H	G	I	K	A	M	N	G	A	L	R	D	K	K	Y	G	G	W	Y	A	C	V	N	D	E	G	V	V	D	A	S	K	Q	G	Y	Q	H	F	F	A	L	L	G	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	S	A	V	T	T	G	H	P	E	A	R	K	L	L	D	Y	T	I	E	I	I	E	K	Y	F	W	S	E	E	E	Q	M	C	L	E	S	W	D	E	A	F	S	K	T	E	E	Y	R	G	G	N	A	N	M	H	A	V	E	A
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	L	I	V	Y	D	V	T	H	D	K	K	W	L	D	R	A	I	R	V	A	S	V	I	I	H	D	V	A	R	N	N	H	Y	R	V	N	E	H	F	D	T	Q	W	N	P	L	P	D	Y	N	K	D	N	P	A	H	R	F	R
Secondary structure
SS confidence
Disorder																																																		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	F	G	G	T	P	G	H	W	I	E	W	G	R	L	M	L	H	I	H	A	A	L	E	A	R	C	E	Q	P	P	A	W	L	L	E	D	A	K	G	L	F	N	A	T	V	R	D	A	W	A	P	D	G	A	D	G	I	V	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		T	V	D	W	E	G	K	P	V	V	R	E	R	V	R	W	P	I	V	E	A	M	G	T	A	Y	A	L	Y	T	V	T	G	D	R	Q	Y	E	T	W	Y	Q	T	W	W	E	Y	C	I	K	Y	L	M	D	Y	E	N	G	S	W
Secondary structure
SS confidence
Disorder							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Sequence		W	Q	E	L	D	A	D	N	K	V	T	T	K	V	W	D	G	K	Q	D	I	Y	H	L	L	H	C	L	V	I	P	R	I	P	L	A	P	G	M	A	P	A	V	A	A	G	L	L	D	I	N	A	K
Secondary structure
SS confidence
Disorder										?		?	?	?	?		?															?	?	?	?	?	?	?	?	?	?	?	?	?	?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2afa chain A domain 1 Region: 2 - 412 Aligned: 407 Modelled: 411 Confidence: 100.0% Identity: 89% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: N-acylglucosamine (NAG) epimerase Phyre2 PDB 3gt5 chain A Region: 4 - 396 Aligned: 384 Modelled: 393 Confidence: 100.0% Identity: 28% PDB header:isomerase Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase; PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa Phyre2 PDB 1fp3 chain A Region: 8 - 390 Aligned: 360 Modelled: 370 Confidence: 100.0% Identity: 17% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: N-acylglucosamine (NAG) epimerase Phyre2 PDB 2gz6 chain B Region: 7 - 390 Aligned: 348 Modelled: 366 Confidence: 100.0% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:n-acetyl-d-glucosamine 2-epimerase; PDBTitle: crystal structure of anabaena sp. ch1 n-acetyl-d-glucosamine 2-2 epimerase at 2.0 a Phyre2 PDB 3k7x chain A Region: 70 - 352 Aligned: 240 Modelled: 246 Confidence: 99.7% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. Phyre2 PDB 2zzr chain A Region: 66 - 370 Aligned: 258 Modelled: 267 Confidence: 99.5% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase; PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae Phyre2 PDB 2d5j chain A domain 1 Region: 71 - 370 Aligned: 261 Modelled: 268 Confidence: 99.3% Identity: 11% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Glycosyl Hydrolase Family 88 Phyre2 PDB 3pmm chain A Region: 68 - 407 Aligned: 292 Modelled: 299 Confidence: 98.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 Phyre2 PDB 3gzk chain A Region: 45 - 409 Aligned: 304 Modelled: 318 Confidence: 98.6% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:cellulase; PDBTitle: structure of a. acidocaldarius cellulase cela Phyre2 PDB 1nc5 chain A Region: 39 - 390 Aligned: 318 Modelled: 324 Confidence: 98.5% Identity: 10% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Hypothetical protein YteR Phyre2 PDB 1wzz chain A domain 1 Region: 35 - 220 Aligned: 182 Modelled: 186 Confidence: 98.5% Identity: 9% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1tf4 chain A domain 1 Region: 45 - 349 Aligned: 262 Modelled: 285 Confidence: 98.3% Identity: 10% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1clc chain A Region: 45 - 349 Aligned: 260 Modelled: 271 Confidence: 98.3% Identity: 10% PDB header:glycosyl hydrolase Chain: A: PDB Molecule:endoglucanase celd; ec: 3.2.1.4; PDBTitle: three-dimensional structure of endoglucanase d at 1.92 angstroms resolution Phyre2 PDB 1ut9 chain A domain 1 Region: 45 - 348 Aligned: 278 Modelled: 281 Confidence: 98.2% Identity: 12% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1g87 chain A domain 1 Region: 45 - 199 Aligned: 144 Modelled: 155 Confidence: 98.0% Identity: 10% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 3k11 chain A Region: 111 - 409 Aligned: 256 Modelled: 277 Confidence: 97.9% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution Phyre2 PDB 1ks8 chain A Region: 45 - 349 Aligned: 255 Modelled: 279 Confidence: 97.9% Identity: 11% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 1ia6 chain A Region: 45 - 349 Aligned: 244 Modelled: 251 Confidence: 97.8% Identity: 8% Fold: alpha/alpha toroid Superfamily: Six-hairpin glycosidases Family: Cellulases catalytic domain Phyre2 PDB 2xfg chain A Region: 45 - 199 Aligned: 145 Modelled: 155 Confidence: 97.8% Identity: 12% PDB header:hydrolase/sugar binding protein Chain: A: PDB Molecule:endoglucanase 1; PDBTitle: reassembly and co-crystallization of a family 9 processive2 endoglucanase from separately expressed gh9 and cbm3c3 modules Phyre2 PDB 1nxc chain A Region: 55 - 352 Aligned: 276 Modelled: 281 Confidence: 97.8% Identity: 12% Fold: alpha/alpha toroid Superfamily: Seven-hairpin glycosidases Family: Class I alpha-1;2-mannosidase, catalytic domain Phyre2 1 d2afaa1 2 c3gt5A_ 3 d1fp3a_ 4 c2gz6B_ 5 c3k7xA_ 6 c2zzrA_ 7 d2d5ja1 8 c3pmmA_ 9 c3gzkA_ 10 d1nc5a_ 11 d1wzza1 12 d1tf4a1 13 c1clcA_ 14 d1ut9a1 15 d1g87a1 16 c3k11A_ 17 d1ks8a_ 18 d1ia6a_ 19 c2xfgA_ 20 d1nxca_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2afaa1 100.0 89 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 2 c3gt5A_ 100.0 28 PDB header:isomerase Chain: A: PDB Molecule:n-acetylglucosamine 2-epimerase; PDBTitle: crystal structure of an n-acetylglucosamine 2-epimerase family protein2 from xylella fastidiosa 3 d1fp3a_ 100.0 17 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:N-acylglucosamine (NAG) epimerase 4 c2gz6B_ 100.0 16 PDB header:isomerase Chain: B: PDB Molecule:n-acetyl-d-glucosamine 2-epimerase; PDBTitle: crystal structure of anabaena sp. ch1 n-acetyl-d-glucosamine 2-2 epimerase at 2.0 a 5 c3k7xA_ 99.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. 6 c2zzrA_ 99.5 10 PDB header:hydrolase Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase; PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae 7 d2d5ja1 99.3 11 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyl Hydrolase Family 88 8 c3pmmA_ 98.9 15 PDB header:hydrolase Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 9 c3gzkA_ 98.6 16 PDB header:hydrolase Chain: A: PDB Molecule:cellulase; PDBTitle: structure of a. acidocaldarius cellulase cela 10 d1nc5a_ 98.5 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Hypothetical protein YteR 11 d1wzza1 98.5 9 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 12 d1tf4a1 98.3 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 13 c1clcA_ 98.3 10 PDB header:glycosyl hydrolase Chain: A: PDB Molecule:endoglucanase celd; ec: 3.2.1.4; PDBTitle: three-dimensional structure of endoglucanase d at 1.92 angstroms resolution 14 d1ut9a1 98.2 12 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 15 d1g87a1 98.0 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 16 c3k11A_ 97.9 13 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution 17 d1ks8a_ 97.9 11 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 18 d1ia6a_ 97.8 8 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 19 c2xfgA_ 97.8 12 PDB header:hydrolase/sugar binding protein Chain: A: PDB Molecule:endoglucanase 1; PDBTitle: reassembly and co-crystallization of a family 9 processive2 endoglucanase from separately expressed gh9 and cbm3c3 modules 20 d1nxca_ 97.8 12 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 21 d1wu4a1 not modelled 97.6 9 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 22 c1ut9A_ not modelled 97.6 12 PDB header:hydrolase Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase; PDBTitle: structural basis for the exocellulase activity of the2 cellobiohydrolase cbha from c. thermocellum 23 c3h7lC_ not modelled 97.6 10 PDB header:hydrolase Chain: C: PDB Molecule:endoglucanase; PDBTitle: crystal structure of endoglucanase-related protein from vibrio2 parahaemolyticus 24 d1v5da_ not modelled 97.5 12 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 25 c1g6iA_ not modelled 97.5 14 PDB header:hydrolase Chain: A: PDB Molecule:class i alpha-1,2-mannosidase; PDBTitle: crystal structure of the yeast alpha-1,2-mannosidase with bound 1-2 deoxymannojirimycin at 1.59 a resolution 26 c3e6uA_ not modelled 97.4 17 PDB header:signaling protein Chain: A: PDB Molecule:lanc-like protein 1; PDBTitle: crystal structure of human lancl1 27 d1clca1 not modelled 97.4 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 28 c1ga2A_ not modelled 97.3 13 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase 9g; PDBTitle: the crystal structure of endoglucanase 9g from clostridium2 cellulolyticum complexed with cellobiose 29 d1ulva1 not modelled 97.2 11 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Bacterial glucoamylase C-terminal domain-like 30 c1w6kA_ not modelled 97.1 12 PDB header:isomerase Chain: A: PDB Molecule:lanosterol synthase; PDBTitle: structure of human osc in complex with lanosterol 31 c1js4B_ not modelled 97.0 13 PDB header:glycosyl hydrolase Chain: B: PDB Molecule:endo/exocellulase e4; PDBTitle: endo/exocellulase:cellobiose from thermomonospora 32 d1kwfa_ not modelled 96.7 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 33 c2v8kA_ not modelled 96.3 17 PDB header:lyase Chain: A: PDB Molecule:pectate lyase; PDBTitle: structure of a family 2 pectate lyase in complex with2 trigalacturonic acid 34 d1g9ga_ not modelled 96.3 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 35 d1hcua_ not modelled 96.1 15 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 36 c1lf6A_ not modelled 95.8 12 PDB header:hydrolase Chain: A: PDB Molecule:glucoamylase; PDBTitle: crystal structure of bacterial glucoamylase 37 d2sqca1 not modelled 95.4 12 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 38 d1dl2a_ not modelled 95.1 14 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 39 c1o79A_ not modelled 95.1 8 PDB header:isomerase Chain: A: PDB Molecule:squalene--hopene cyclase; PDBTitle: structures of human oxidosqualene cyclase inhibitors bound2 to a homolgous enzyme 40 c1ug9A_ not modelled 94.3 14 PDB header:hydrolase Chain: A: PDB Molecule:glucodextranase; PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42 41 c3qxqD_ not modelled 94.3 7 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase; PDBTitle: structure of the bacterial cellulose synthase subunit z in complex2 with cellopentaose 42 c2a73B_ not modelled 94.0 12 PDB header:immune system Chain: B: PDB Molecule:complement c3; PDBTitle: human complement component c3 43 c3renB_ not modelled 93.9 12 PDB header:hydrolase Chain: B: PDB Molecule:glycosyl hydrolase, family 8; PDBTitle: cpf_2247, a novel alpha-amylase from clostridium perfringens 44 c1x9dA_ not modelled 93.8 12 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum mannosyl-oligosaccharide 1, PDBTitle: crystal structure of human class i alpha-1,2-mannosidase in2 complex with thio-disaccharide substrate analogue 45 d1x9da1 not modelled 93.8 12 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 46 d1c3da_ not modelled 93.0 12 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Complement components 47 c3g6jB_ not modelled 92.9 12 PDB header:immune system Chain: B: PDB Molecule:complement c3 alpha chain; PDBTitle: c3b in complex with a c3b specific fab 48 d1lf6a1 not modelled 92.7 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Bacterial glucoamylase C-terminal domain-like 49 c3c67B_ not modelled 92.5 14 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ygjk; PDBTitle: escherichia coli k12 ygjk in a complexed with glucose 50 d1w6ka1 not modelled 92.0 12 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 51 c2pn5A_ not modelled 91.6 11 PDB header:immune system Chain: A: PDB Molecule:thioester-containing protein i; PDBTitle: crystal structure of tep1r 52 d1qqfa_ not modelled 91.6 12 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Complement components 53 d2g0da1 not modelled 89.9 10 Fold:alpha/alpha toroid Superfamily:LanC-like Family:LanC-like 54 d2jg0a1 not modelled 88.9 14 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Trehalase-like 55 c2jg0A_ not modelled 88.9 14 PDB header:hydrolase Chain: A: PDB Molecule:periplasmic trehalase; PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin 56 c2b39B_ not modelled 86.2 12 PDB header:immune system Chain: B: PDB Molecule:c3; PDBTitle: structure of mammalian c3 with an intact thioester at 3a resolution 57 c3eu8D_ not modelled 82.7 10 PDB header:hydrolase Chain: D: PDB Molecule:putative glucoamylase; PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution 58 d1h12a_ not modelled 79.0 11 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 59 c1krfA_ not modelled 75.9 16 PDB header:hydrolase Chain: A: PDB Molecule:mannosyl-oligosaccharide alpha-1,2-mannosidase; PDBTitle: structure of p. citrinum alpha 1,2-mannosidase reveals the basis for2 differences in specificity of the er and golgi class i enzymes 60 d2ri9a1 not modelled 75.9 16 Fold:alpha/alpha toroid Superfamily:Seven-hairpin glycosidases Family:Class I alpha-1;2-mannosidase, catalytic domain 61 c1v7wA_ not modelled 73.5 13 PDB header:transferase Chain: A: PDB Molecule:chitobiose phosphorylase; PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac 62 c1l2aD_ not modelled 67.6 16 PDB header:hydrolase Chain: D: PDB Molecule:cellobiohydrolase; PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome 63 d1l1ya_ not modelled 67.6 16 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Cellulases catalytic domain 64 c3cu7A_ not modelled 65.2 11 PDB header:immune system Chain: A: PDB Molecule:complement c5; PDBTitle: human complement component 5 65 c2z07A_ not modelled 61.3 11 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ttha0978; PDBTitle: crystal structure of uncharacterized conserved protein from2 thermus thermophilus hb8 66 c3nfvA_ not modelled 41.1 16 PDB header:lyase Chain: A: PDB Molecule:alginate lyase; PDBTitle: crystal structure of an alginate lyase (bacova_01668) from bacteroides2 ovatus at 1.95 a resolution 67 d1r76a_ not modelled 38.0 16 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 68 d1gxma_ not modelled 35.7 10 Fold:alpha/alpha toroid Superfamily:Family 10 polysaccharide lyase Family:Family 10 polysaccharide lyase 69 c2konA_ not modelled 28.2 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of cv_2116 from chromobacterium2 violaceum. northeast structural genomics consortium target3 cvt4(1-82) 70 d1v7wa1 not modelled 20.2 10 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glycosyltransferase family 36 C-terminal domain 71 d1qaza_ not modelled 18.4 27 Fold:alpha/alpha toroid Superfamily:Chondroitin AC/alginate lyase Family:Alginate lyase A1-III 72 c2eacB_ not modelled 18.1 11 PDB header:hydrolase Chain: B: PDB Molecule:alpha-fucosidase; PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin 73 d1ccwb_ not modelled 18.1 16 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Glutamate mutase, large subunit 74 d2fbaa1 not modelled 17.3 11 Fold:alpha/alpha toroid Superfamily:Six-hairpin glycosidases Family:Glucoamylase 75 c1hzfA_ not modelled 10.5 13 PDB header:immune system Chain: A: PDB Molecule:complement factor c4a; PDBTitle: c4adg fragment of human complement factor c4a 76 d1hzfa_ not modelled 10.5 13 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Complement components 77 c3cihA_ not modelled 9.8 10 PDB header:hydrolase Chain: A: PDB Molecule:putative alpha-rhamnosidase; PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron 78 d2diga1 not modelled 8.5 38 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 79 c1zr7A_ not modelled 8.5 29 PDB header:signaling protein Chain: A: PDB Molecule:huntingtin-interacting protein hypa/fbp11; PDBTitle: solution structure of the first ww domain of fbp11 80 c2jxwA_ not modelled 7.9 17 PDB header:formin binding protein Chain: A: PDB Molecule:ww domain-binding protein 4; PDBTitle: solution structure of the tandem ww domains of fbp21 81 c3a0oB_ not modelled 6.7 11 PDB header:lyase Chain: B: PDB Molecule:oligo alginate lyase; PDBTitle: crystal structure of alginate lyase from agrobacterium tumefaciens c58 82 d2sqca2 not modelled 6.5 9 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 83 d2dk1a1 not modelled 6.4 14 Fold:WW domain-like Superfamily:WW domain Family:WW domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0