Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP13035
DateThu Jan 5 11:33:30 GMT 2012
Unique Job ID207abaac93364809

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2r4jA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
Confidence and coverage
Confidence:100.0% Coverage: 98%
493 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYE
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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  FRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGS
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?




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   .........130.........140.........150.........160.........170.........180
Sequence  TGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENG
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   .........190.........200.........210.........220.........230.........240
Sequence  LWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVH
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??????

















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   .........250.........260.........270.........280.........290.........300
Sequence  TQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHF
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   .........310.........320.........330.........340.........350.........360
Sequence  KKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRK
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?
????????





























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   .........370.........380.........390.........400.........410.........420
Sequence  LAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYART
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?























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   .........430.........440.........450.........460.........470.........480
Sequence  YGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNAD
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   .........490.........500.
Sequence  QQSRVSQWLVEYTQQRLSLAS
Secondary structure 



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Disorder 















?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2r4j chain A

3D model

Region: 1 - 493
Aligned: 493
Modelled: 493
Confidence: 100.0%
Identity: 99%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap

Phyre2

PDB 2rgo chain A

3D model

Region: 2 - 500
Aligned: 490
Modelled: 495
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2

PDB 2rgh chain A

3D model

Region: 2 - 500
Aligned: 480
Modelled: 498
Confidence: 100.0%
Identity: 30%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2

PDB 3da1 chain A

3D model

Region: 2 - 500
Aligned: 445
Modelled: 462
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.

Phyre2

PDB 3dme chain B

3D model

Region: 3 - 369
Aligned: 356
Modelled: 365
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141

Phyre2

PDB 1pj6 chain A

3D model

Region: 2 - 371
Aligned: 347
Modelled: 366
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid

Phyre2

PDB 1y56 chain B

3D model

Region: 2 - 390
Aligned: 367
Modelled: 378
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii

Phyre2

PDB 2gah chain B

3D model

Region: 1 - 371
Aligned: 347
Modelled: 359
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution

Phyre2

PDB 2oln chain A

3D model

Region: 2 - 371
Aligned: 350
Modelled: 370
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution

Phyre2

PDB 3ps9 chain A

3D model

Region: 3 - 369
Aligned: 349
Modelled: 367
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli

Phyre2

PDB 3nye chain A

3D model

Region: 2 - 369
Aligned: 344
Modelled: 357
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine

Phyre2

PDB 3pvc chain A

3D model

Region: 2 - 370
Aligned: 350
Modelled: 362
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis

Phyre2

PDB 3bhk chain A

3D model

Region: 3 - 371
Aligned: 346
Modelled: 366
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant

Phyre2

PDB 3dje chain A

3D model

Region: 2 - 373
Aligned: 345
Modelled: 356
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa

Phyre2

PDB 1ryi chain B

3D model

Region: 1 - 370
Aligned: 342
Modelled: 359
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate

Phyre2

PDB 1kif chain E

3D model

Region: 6 - 377
Aligned: 326
Modelled: 355
Confidence: 100.0%
Identity: 15%
PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney

Phyre2

PDB 2uzz chain D

3D model

Region: 3 - 369
Aligned: 342
Modelled: 356
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)

Phyre2

PDB 1c0i chain A

3D model

Region: 1 - 377
Aligned: 339
Modelled: 344
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules

Phyre2

PDB 1pj5 chain A domain 2

3D model

Region: 3 - 324
Aligned: 300
Modelled: 322
Confidence: 99.9%
Identity: 15%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 1ryi chain A domain 1

3D model

Region: 1 - 233
Aligned: 225
Modelled: 233
Confidence: 99.9%
Identity: 16%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2
1

c2r4jA_
2

c2rgoA_
3

c2rghA_
4

c3da1A_
5

c3dmeB_
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c1pj6A_
7

c1y56B_
8

c2gahB_
9

c2olnA_
10

c3ps9A_
11

c3nyeA_
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c3pvcA_
13

c3bhkA_
14

c3djeA_
15

c1ryiB_
16

c1kifE_
17

c2uzzD_
18

c1c0iA_
19

d1pj5a2
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d1ryia1
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2r4jA_



100.0 99 PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
2c2rgoA_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
3c2rghA_



100.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
4c3da1A_



100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
5c3dmeB_



100.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
6c1pj6A_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
7c1y56B_



100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
8c2gahB_



100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
9c2olnA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
10c3ps9A_



100.0 13 PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli
11c3nyeA_



100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
12c3pvcA_



100.0 15 PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis
13c3bhkA_



100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant
14c3djeA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
15c1ryiB_



100.0 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate
16c1kifE_



100.0 15 PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney
17c2uzzD_



100.0 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
18c1c0iA_



100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules
19d1pj5a2



99.9 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
20d1ryia1



99.9 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
21d2gf3a1



not modelled 99.9 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
22c1x31A_



not modelled 99.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
23d1c0pa1



not modelled 99.8 18 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
24c2aczA_



not modelled 99.8 16 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
25c1yq4A_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
26d1kifa1



not modelled 99.8 19 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
27c1y56A_



not modelled 99.8 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1363;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
28d1neka2



not modelled 99.8 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
29c2bs3A_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
30c3atrA_



not modelled 99.8 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
31c1jrxA_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
32c1qo8A_



not modelled 99.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
33c3ka7A_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
34d2bs2a2



not modelled 99.7 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
35c3p4rM_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
36d1kf6a2



not modelled 99.7 11 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
37c1d4cB_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
38c3i3lA_



not modelled 99.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
39c1kf6A_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
40d1y0pa2



not modelled 99.7 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
41d1qo8a2



not modelled 99.7 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
42c3e1tA_



not modelled 99.7 17 PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
43c3nixF_



not modelled 99.7 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:flavoprotein/dehydrogenase;
PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
44c2weuD_



not modelled 99.7 15 PDB header:antifungal protein
Chain: D: PDB Molecule:tryptophan 5-halogenase;
PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan
45c3i6dA_



not modelled 99.7 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of ppo from bacillus subtilis with af
46d2gqfa1



not modelled 99.6 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
47c3cgvA_



not modelled 99.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:geranylgeranyl reductase related protein;
PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution
48c2gmhA_



not modelled 99.6 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
49d1d5ta1



not modelled 99.6 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
50c2ardA_



not modelled 99.6 10 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase prna;
PDBTitle: the structure of tryptophan 7-halogenase (prna) suggests a mechanism2 for regioselective chlorination
51c2zxiC_



not modelled 99.6 14 PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
52c1ltxR_



not modelled 99.6 12 PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
53c2eq8E_



not modelled 99.6 23 PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
54d1o5wa1



not modelled 99.6 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
55d1d4ca2



not modelled 99.6 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
56c2qa2A_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase cabe;
PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution
57d2i0za1



not modelled 99.6 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
58c3dgzA_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
59c1zkqA_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2, mitochondrial;
PDBTitle: crystal structure of mouse thioredoxin reductase type 2
60c3gyxA_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
61c2e4gB_



not modelled 99.5 13 PDB header:biosynthetic protein, flavoprotein
Chain: B: PDB Molecule:tryptophan halogenase;
PDBTitle: rebh with bound l-trp
62d2bcgg1



not modelled 99.5 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
63c2pyxA_



not modelled 99.5 14 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase;
PDBTitle: crystal structure of tryptophan halogenase (yp_750003.1) from2 shewanella frigidimarina ncimb 400 at 1.50 a resolution
64c2fjaC_



not modelled 99.5 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:adenylylsulfate reductase, subunit a;
PDBTitle: adenosine 5'-phosphosulfate reductase in complex with2 substrate
65c3g05B_



not modelled 99.5 18 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
66c2dkhA_



not modelled 99.5 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate
67d3coxa1



not modelled 99.5 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
68c1bwcA_



not modelled 99.5 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (glutathione reductase);
PDBTitle: structure of human glutathione reductase complexed with ajoene2 inhibitor and subversive substrate
69c2nvkX_



not modelled 99.5 19 PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
70c3urhB_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021
71c3cesB_



not modelled 99.5 20 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
72d2gmha1



not modelled 99.5 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
73c1phhA_



not modelled 99.5 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate
74c3fmwC_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxygenase;
PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus.
75c2c3dB_



not modelled 99.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxopropyl-com reductase;
PDBTitle: 2.15 angstrom crystal structure of 2-ketopropyl coenzyme m2 oxidoreductase carboxylase with a coenzyme m disulfide3 bound at the active site
76c1v59B_



not modelled 99.5 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
77d1k0ia1



not modelled 99.5 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
78c2ivdA_



not modelled 99.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen
79d1chua2



not modelled 99.4 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
80c3cp8C_



not modelled 99.4 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
81c3k7tB_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase;
PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121
82c2e5vA_



not modelled 99.4 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate oxidase;
PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii
83c2gewA_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: atomic resolution structure of cholesterol oxidase @ ph 9.02 (streptomyces sp. sa-coo)
84c1coyA_



not modelled 99.4 20 PDB header:oxidoreductase(oxygen receptor)
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase complexed with a2 steroid substrate. implications for fad dependent alcohol3 oxidases
85c1gndA_



not modelled 99.4 15 PDB header:gtpase activation
Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor;
PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
86c2f5vA_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyranose 2-oxidase;
PDBTitle: reaction geometry and thermostability mutant of pyranose 2-oxidase2 from the white-rot fungus peniophora sp.
87c1ebdB_



not modelled 99.4 17 PDB header:complex (oxidoreductase/transferase)
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase
88c3jskN_



not modelled 99.4 17 PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
89c1zmcG_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
90c3v76A_



not modelled 99.4 18 PDB header:flavoprotein
Chain: A: PDB Molecule:flavoprotein;
PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti
91c2igoG_



not modelled 99.4 13 PDB header:oxidoreductase
Chain: G: PDB Molecule:pyranose oxidase;
PDBTitle: crystal structure of pyranose 2-oxidase h167a mutant with 2-2 fluoro-2-deoxy-d-glucose
92c1s3bB_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
93c3cpiH_



not modelled 99.4 16 PDB header:protein transport
Chain: H: PDB Molecule:rab gdp-dissociation inhibitor;
PDBTitle: crystal structure of yeast rab-gdi
94c2eq7B_



not modelled 99.4 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
95d1rp0a1



not modelled 99.4 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Thi4-like
96c3o0hA_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
97c2a8xA_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis
98c3ihgA_



not modelled 99.4 14 PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone
99c3nrnA_



not modelled 99.4 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pf1083;
PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223
100c2gqfA_



not modelled 99.4 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0933;
PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd
101d1w4xa1



not modelled 99.4 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
102c1geuA_



not modelled 99.4 19 PDB header:oxidoreductase(flavoenzyme)
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: anatomy of an engineered nad-binding site
103c1dxlC_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
104c3nlcA_



not modelled 99.4 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vp0956;
PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
105c1yvvB_



not modelled 99.4 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase, flavin-containing;
PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10.
106d1kdga1



not modelled 99.4 11 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
107c1lpfB_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
108c1tytA_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase, oxidized form;
PDBTitle: crystal and molecular structure of crithidia fasciculata2 trypanothione reductase at 2.6 angstroms resolution
109c2cfyB_



not modelled 99.4 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
110c2hqmB_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase glr1 from the yeast2 saccharomyces cerevisiae
111d1n4wa1



not modelled 99.3 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
112c2w0hA_



not modelled 99.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:trypanothione reductase;
PDBTitle: x ray structure of leishmania infantum trypanothione2 reductase in complex with antimony and nadph
113c2rgjA_



not modelled 99.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of flavin-containing monooxygenase phzs
114c2jbvA_



not modelled 99.3 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:choline oxidase;
PDBTitle: crystal structure of choline oxidase reveals insights into2 the catalytic mechanism
115c3ic9D_



not modelled 99.3 13 PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h.
116d1jnra2



not modelled 99.3 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
117c2i0zA_



not modelled 99.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
118c1zx9A_



not modelled 99.3 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: crystal structure of tn501 mera
119c1naaB_



not modelled 99.3 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: cellobiose dehydrogenase flavoprotein fragment in complex with2 cellobionolactam
120d1vg0a1



not modelled 99.3 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0