Email l.a.kelley@imperial.ac.uk Description P52636 Date Thu Jan 5 12:05:55 GMT 2012 Unique Job ID 1e88f44bd382c1da

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gx7A_ 98.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 2 c1kqfB_ 98.8 29 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 3 d1gtea5 98.8 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 4 c1hfeL_ 98.8 22 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 5 c2fugG_ 98.8 32 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 6 d2fug91 98.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 c2c3yA_ 98.7 29 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 8 d1kqfb1 98.7 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 c1gthD_ 98.7 25 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 10 c1c4cA_ 98.7 25 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 11 d1xera_ 98.6 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 12 d1dura_ 98.6 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 13 d2fdna_ 98.6 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 14 c2vpyB_ 98.6 31 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 15 d1vjwa_ 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 16 d1y5ib1 98.6 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 c1ti2F_ 98.6 16 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 18 d1iqza_ 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 19 d1hfel2 98.6 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 20 d7fd1a_ 98.6 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 21 d1h0hb_ not modelled 98.6 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 22 c2ivfB_ not modelled 98.6 22 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 23 c3gyxJ_ not modelled 98.5 25 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 24 d1jnrb_ not modelled 98.5 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 d1jb0c_ not modelled 98.5 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 26 d1bc6a_ not modelled 98.5 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 27 d1fcaa_ not modelled 98.5 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 28 d3c8ya3 not modelled 98.4 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 29 d1h98a_ not modelled 98.4 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 30 c2gmhA_ not modelled 98.4 22 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 31 d2fug34 not modelled 98.4 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 32 d1sj1a_ not modelled 98.4 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 33 c2zvsB_ not modelled 98.4 25 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 34 d1clfa_ not modelled 98.3 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 35 c2fugC_ not modelled 98.3 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 36 d1rgva_ not modelled 98.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 37 d1blua_ not modelled 98.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 38 d2c42a5 not modelled 98.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 39 c2v2kB_ not modelled 98.2 24 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 40 d1vlfn2 not modelled 98.2 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 41 c1dwlA_ not modelled 98.2 21 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 42 c2fgoA_ not modelled 98.2 25 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 43 d1fxra_ not modelled 98.1 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 44 c3c7bE_ not modelled 98.0 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 45 d2gmha3 not modelled 98.0 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 46 c2v4jE_ not modelled 98.0 24 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 47 c3c7bA_ not modelled 97.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 48 c2v4jA_ not modelled 97.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 49 d3c7bb1 not modelled 97.6 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 50 d1nekb1 not modelled 97.5 31 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 51 d1kf6b1 not modelled 97.5 31 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d2bs2b1 not modelled 97.5 24 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 c1nekB_ not modelled 97.4 32 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 54 c2h89B_ not modelled 97.4 29 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 55 c2b76N_ not modelled 97.4 29 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 56 c2bs2E_ not modelled 97.4 28 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 57 c3cf4A_ not modelled 97.3 34 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 58 c3bk7A_ not modelled 97.3 22 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 59 c2vdcI_ not modelled 95.7 36 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 60 d2v4ja1 not modelled 93.7 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d3c7ba1 not modelled 93.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 d2v4jb1 not modelled 88.8 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 63 d1gtea1 not modelled 67.9 32 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 64 c2dtgE_ not modelled 66.5 24 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 65 d1fxda_ not modelled 44.9 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 66 c1g8jC_ not modelled 34.1 16 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 67 c1igrA_ not modelled 33.9 26 PDB header:hormone receptor Chain: A: PDB Molecule:insulin-like growth factor receptor 1; PDBTitle: type 1 insulin-like growth factor receptor (domains 1-3) 68 c2hr7B_ not modelled 33.8 25 PDB header:transferase Chain: B: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (domains 1-3) 69 d3cx5c2 not modelled 31.3 25 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 70 c2fugA_ not modelled 25.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 71 c2eoyA_ not modelled 24.9 46 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473 72 d1ofda2 not modelled 20.7 37 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 73 c2l3kA_ not modelled 19.0 21 PDB header:oncoprotein Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1; PDBTitle: solution structure of lmo2(lim2)-ldb1(lid) 74 d1ea0a2 not modelled 17.1 33 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 75 c1x4lA_ not modelled 16.1 14 PDB header:metal binding protein Chain: A: PDB Molecule:skeletal muscle lim-protein 3; PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2 76 c1moxB_ not modelled 15.5 24 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 77 c2l6yB_ not modelled 15.4 23 PDB header:transcription regulation/oncoprotein Chain: B: PDB Molecule:lim domain only 2, linker, lim domain-binding protein 1; PDBTitle: haddock model of gata1nf:lmo2lim2-ldb1lid 78 d2dkta2 not modelled 15.2 30 Fold:Zinc hairpin stack Superfamily:Zinc hairpin stack Family:Zinc hairpin stack 79 c1x64A_ not modelled 14.0 27 PDB header:contractile protein Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein; PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein 80 c2co8A_ not modelled 13.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains 81 c3mjhD_ not modelled 13.6 33 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 82 c2pmzS_ not modelled 13.5 24 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 83 c2b5lC_ not modelled 13.3 33 PDB header:protein binding/viral protein Chain: C: PDB Molecule:nonstructural protein v; PDBTitle: crystal structure of ddb1 in complex with simian virus 5 v2 protein 84 c2crcA_ not modelled 12.5 50 PDB header:ligase Chain: A: PDB Molecule:ubiquitin conjugating enzyme 7 interacting PDBTitle: solution structure of the zf-ranbp domain of the protein2 hbv associated factor 85 c1w1nA_ not modelled 11.8 36 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1; PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast 86 c1x62A_ not modelled 11.7 30 PDB header:structural protein Chain: A: PDB Molecule:c-terminal lim domain protein 1; PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1 87 d1wt8a1 not modelled 11.6 25 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 88 c1zlgA_ not modelled 11.4 24 PDB header:hormone/growth factor Chain: A: PDB Molecule:anosmin 1; PDBTitle: solution structure of the extracellular matrix protein2 anosmin-1 89 d1kbsa_ not modelled 11.4 45 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 90 c1x68A_ not modelled 11.3 19 PDB header:protein binding Chain: A: PDB Molecule:fhl5 protein; PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein 91 c1v06A_ not modelled 10.7 22 PDB header:dna-binding protein Chain: A: PDB Molecule:hmg box-containing protein 1; PDBTitle: axh domain of the transcription factor hbp1 from m.musculus 92 c3qntA_ not modelled 10.6 45 PDB header:transport protein Chain: A: PDB Molecule:niemann-pick c1-like protein 1; PDBTitle: npc1l1 (ntd) structure 93 c1m6bA_ not modelled 10.1 26 PDB header:signaling protein, transferase Chain: A: PDB Molecule:receptor protein-tyrosine kinase erbb-3; PDBTitle: structure of the her3 (erbb3) extracellular domain 94 c1x63A_ not modelled 9.6 22 PDB header:contractile protein Chain: A: PDB Molecule:skeletal muscle lim-protein 1; PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1 95 c2a91A_ not modelled 9.6 23 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 96 c2x9qA_ not modelled 9.3 11 PDB header:ligase Chain: A: PDB Molecule:cyclodipeptide synthetase; PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases. 97 d1djqa3 not modelled 9.0 36 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 98 c3gczA_ not modelled 8.8 31 PDB header:transferase Chain: A: PDB Molecule:polyprotein; PDBTitle: yokose virus methyltransferase in complex with adomet 99 c3u5ga_ not modelled 8.7 22 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution