[ Fold Library: v.1.53.7800 ] [ Sequence Database: v.2002.11.8 ] [ 3D-PSSM Binary: v.2.2 ] [ Server Version: v.2.6.0 ]
Results for Intron_maturase_II

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Please Note: 3D-PSSM is for academic use only

Please Cite: Enhanced Genome Annotation using Structural Profiles in the Program 3D-PSSM.
Kelley LA, MacCallum RM & Sternberg MJE (2000). J. Mol. Biol. 299(2), 499-520.

Sidechains, where applicable, have been modelled by SCWRL

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Job Submitted on Mon Nov 11 12:52:45 GMT 2002


Description:Intron_maturase_II
Remote Host:obelix.sbc.su.se
Remote Address:130.237.93.25
E-mail Address:maccallr@sbc.su.se
Input Format:single
Query Length:162
Global Local:yes
Low-complexity Filter:yes
PROSITE motifs
NONE                                                  

Query Functional Keywords Weight
mRNA processing11
Chloroplast7

E-value Key (% Certainty)
  95%     90%     80%     70%     50%  
HELP - Interpreting your Results

Query PSSM

View Alignment Fold Library Template Length Model PSSM E_value SAWTED E-value Biotext Class Fold SuperFamily Family Protein                                                                       Species ID Region CS PSSM Type
View Alignment d1tfr_1 19%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 0.111 1n/a All alpha proteins SAM domain-like 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease, C-terminal subdomain T4 RNase H Bacteriophage T4 1tfr 183-305 0.802 1D
View Alignment d1higa_ 11%i.d. 123 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 2.49 0.885
ii 		1.00 All alpha proteins 4-helical cytokines 4-helical cytokines Interferons/interleukin-10 (IL-10) Interferon-gamma Human (Homo sapiens) 1hig a: 0.500 3D
View Alignment d1iara_ 12%i.d. 129 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 3.16 0.751
splicing,ii 		1.00 All alpha proteins 4-helical cytokines 4-helical cytokines Short-chain cytokines Interleukin-4 (IL-4) Human (Homo sapiens) 1iar a: 0.500 R1D
View Alignment d1vola1 17%i.d. 95 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 4.67 0.792
ii 		1.00 All alpha proteins Cyclin-like Cyclin-like Transcription factor IIB (TFIIB), core domain Transcription factor IIB (TFIIB), core domain Human (Homo sapiens) 1vol a:113-207 0.943 1D
View Alignment c1g4yb_ 16%i.d. 81 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.09 11.00 not in SCOP 1.53 PDB header: signaling protein. Chain: B: PDB Molecule:calcium-activated potassium channel rsk2;. . PDBTitle: 1.60 a crystal structure of the gating domain from small2 conductance potassium channel complexed with calcium-3 calmodulin . - 1g4y b 0.000 1D
View Alignment c1ytfd_ 17%i.d. 100 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 5.4 0.82
ii 		1.00 not in SCOP 1.53 PDB header: complex (transcription regulation/dna). Chain: D: PDB Molecule:yeast transcription factor iia;. . PDBTitle: yeast tfiia/tbp/dna complex . - 1ytf d 0.000 1D
View Alignment d1fipa_ 22%i.d. 73 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.01 11.00 All alpha proteins FIS-like FIS-like FIS-like FIS protein Escherichia coli 1fip a: 0.000 1D
View Alignment d1d9ca_ 11%i.d. 121 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 7.74 0.87
ii 		1.00 All alpha proteins 4-helical cytokines 4-helical cytokines Interferons/interleukin-10 (IL-10) Interferon-gamma Bovine (Bos taurus) 1d9c a: 0.500 1D
View Alignment c1jm7b_ 13%i.d. 97 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 8.5 11.00 not in SCOP 1.53 PDB header: antitumor. Chain: B: PDB Molecule:brca1-associated ring domain protein 1;. . PDBTitle: solution structure of the brca1/bard1 ring-domain2 heterodimer . - 1jm7 b 0.000 R1D
View Alignment c1gjha_ 18%i.d. 164 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 8.51 0.631
regions,splicing,ii,mitochondrial 		1.00 Membrane and cell surface proteins and peptides Toxins' membrane translocation domains Bcl-2 inhibitors of programmed cell death homol. to d1maz__ - - 1gjh a 0.000 1D
View Alignment d2rig__ 14%i.d. 119 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 8.62 0.869
ii 		1.00 All alpha proteins 4-helical cytokines 4-helical cytokines Interferons/interleukin-10 (IL-10) Interferon-gamma Rabbit (Oryctolagus cuniculus) 2rig - 0.500 1D
View Alignment d1brwa1 10%i.d. 70 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 8.77 11.00 All alpha proteins Methionine synthase domain-like Pyrimidine nucleoside phosphorylase N-terminal domain Pyrimidine nucleoside phosphorylase N-terminal domain Pyrimidine nucleoside phosphorylase Bacillus stearothermophilus 1brw a:1-70 0.000 3D
View Alignment d1af7_1 12%i.d. 81 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 9.05 11.00 All alpha proteins Chemotaxis receptor methyltransferase CheR, N-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain Salmonella typhimurium 1af7 11-91 0.500 R1D
View Alignment d1a77_1 12%i.d. 108 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10 11.00 All alpha proteins SAM domain-like 5' to 3' exonuclease, C-terminal subdomain 5' to 3' exonuclease, C-terminal subdomain Flap endonuclease-1 Methanococcus jannaschii 1a77 209-316 0.912 1D
View Alignment d1aisb1 7%i.d. 98 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.3 0.829
ii 		1.00 All alpha proteins Cyclin-like Cyclin-like Transcription factor IIB (TFIIB), core domain Transcription factor IIB (TFIIB), core domain Pyrococcus woesei 1ais b:1108-1205 0.968 3D
View Alignment c1e6ia_ 19%i.d. 110 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.4 11.00 All alpha proteins Bromodomain-like Bromodomain homol. to d1b91a_ - - 1e6i a 0.000 1D
View Alignment d1a0p_1 12%i.d. 91 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.6 11.00 All alpha proteins SAM domain-like lambda integrase-like, N-terminal domain lambda integrase-like, N-terminal domain Recombinase XerD Escherichia coli 1a0p 3-100 0.000 R1D
View Alignment d1vin_1 20%i.d. 128 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 10.6 11.00 All alpha proteins Cyclin-like Cyclin-like Cyclin Cyclin A Bovine (Bos taurus) 1vin 181-308 1.000 1D
View Alignment c1gd8a_ 12%i.d. 105 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 11 11.00 not in SCOP 1.53 PDB header: ribosome. Chain: A: PDB Molecule:50s ribosomal protein l17;. . PDBTitle: the crystal structure of bacteria-specific l17 ribosomal2 protein. . - 1gd8 a 0.000 R1D
View Alignment d1bu2a1 13%i.d. 127 View Model with Rasmol or Shift-Click to Save Coordinates
Chime View
 11.1 11.00 All alpha proteins Cyclin-like Cyclin-like Cyclin Viral cyclin Herpes virus saimiri 1bu2 a:22-148 0.847 3D