Alignment of Intron_maturase_II with d1iara

Alignment of Intron_maturase_II with d1iara

PSSM Score Key
-10																			10

Bad																			Good

Alternative Interactive View of this alignment using Seaview

Don't Have Seaview?
FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1iara__Seq	Library Sequence
d1iara__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

.

E

E

C

C

C

H

H

H

H

H

H

H

H

H

C

C

.

C

C

C

.

.

.

.

C

C

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

C

C

H

Intron__Seq

H

T

S

L

V

.

V

N

A

P

I

R

S

I

V

M

K

L

N

K

H

G

.

Y

C

S

.

.

.

.

H

G

I

L

G

K

P

R

G

V

G

R

L

I

H

E

E

M

K

T

-------

-

+

-

+

+

+

-

-

I

+

-

-

-

+

L

-

+

-

C

+

I

-

-

+

+

+

-

K

d1iara__Seq

.

H

K

C

D

I

T

L

Q

E

I

I

K

T

L

N

S

L

T

E

Q

K

T

L

C

T

E

L

T

V

T

D

I

F

A

.

.

A

S

K

.

.

.

.

N

T

T

E

K

E

d1iara__SS

.

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

E

E

E

C

C

C

C

.

.

C

C

C

.

.

.

.

C

C

C

H

H

H

CORE

.

0

0

0

0

0

0

1

0

0

4

0

0

1

5

0

0

5

0

0

0

0

0

0

0

1

0

0

0

4

1

0

4

3

0

.

.

0

0

0

.

.

.

.

0

0

0

0

0

0

Intron__PSS

H

H

H

H

H

H

H

H

H

C

C

H

.

H

H

H

.

.

.

.

.

.

.

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

Intron__Seq

I

L

M

H

Y

L

A

V

G

R

G

I

.

M

N

Y

.

.

.

.

.

.

.

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

Y

S

C

C

L

T

L

.

-------

-

-

-

+

-

-

-

V

-

R

-

+

+

-

-

A

-

+

F

-

-

-

-

I

+

-

+

+

-

+

-

L

d1iara__Seq

T

F

C

R

A

A

T

V

L

R

Q

F

Y

S

H

H

E

K

D

T

R

C

L

G

A

T

A

Q

Q

F

H

R

H

K

Q

L

I

R

F

L

K

R

L

D

.

.

R

N

L

W

d1iara__SS

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

H

H

H

H

CORE

1

2

0

0

9

2

0

4

9

0

0

3

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

3

0

0

1

6

0

0

8

0

.

.

0

0

8

0

Intron__PSS

.

.

H

.

.

.

.

.

.

.

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

Intron__Seq

.

.

A

.

.

.

.

.

.

.

S

K

F

K

L

N

T

V

K

K

V

I

L

K

F

G

K

V

L

V

D

P

H

S

K

V

S

F

S

I

D

D

F

K

I

R

H

K

M

N

-------

A

-

-

+

T

-

+

+

+

+

-

-

-

+

+

S

K

-

S

-

d1iara__Seq

G

L

A

G

L

N

S

C

P

V

K

E

A

N

Q

S

T

L

E

N

F

L

E

R

L

K

T

I

M

R

E

K

Y

S

K

C

S

S

.

.

.

.

.

.

.

.

.

.

.

.

d1iara__SS

H

H

H

C

C

C

C

C

C

C

C

C

C

C

E

E

E

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

CORE

0

1

1

0

0

0

0

0

0

2

0

0

0

0

0

2

0

6

0

0

5

6

0

0

8

0

0

1

3

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

Intron__PSS

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

M

T

D

S

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1iara__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

d1iara__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.