Alignment of Intron_maturase_II with d1tfr_

Alignment of Intron_maturase_II with d1tfr_

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1tfr_1_Seq	Library Sequence
d1tfr_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

C

C

E

E

C

C

C

C

C

C

H

Intron__Seq

H

T

S

L

V

V

N

A

P

I

R

S

I

V

M

K

L

N

K

H

G

Y

C

S

H

G

I

L

G

K

P

R

G

.

.

.

.

.

.

V

G

R

L

I

H

E

E

M

K

T

-------

+

-

-

+

K

+

-

K

-

-

-

+

-

-

-

K

-

R

V

-

-

-

-

-

M

K

T

d1tfr_1_Seq

.

.

.

.

.

.

G

S

A

E

I

D

C

M

T

K

I

L

K

G

D

K

K

D

N

V

A

S

V

K

V

R

S

D

F

W

F

T

R

V

E

G

E

R

T

P

S

M

K

T

d1tfr_1_SS

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

C

C

C

C

C

C

C

C

C

C

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

H

CORE

.

.

.

.

.

.

0

0

0

0

2

0

0

3

1

0

1

9

0

0

0

0

0

0

0

1

0

0

6

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

4

0

0

Intron__PSS

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

Intron__Seq

I

L

M

H

Y

L

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

.

.

.

.

.

.

.

Y

S

C

C

L

T

L

A

S

-------

-

+

+

-

+

A

-

R

-

-

-

+

+

+

-

+

I

-

F

-

S

-

+

-

+

d1tfr_1_Seq

S

I

V

E

A

I

A

N

D

R

E

Q

A

K

V

L

L

T

E

S

E

Y

N

R

Y

K

E

N

L

V

L

I

D

F

D

Y

I

P

D

N

I

A

S

N

I

V

N

Y

Y

N

d1tfr_1_SS

H

H

H

H

H

H

H

H

C

H

H

H

H

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

H

H

H

C

C

H

H

H

H

H

H

H

H

H

H

H

H

CORE

0

5

5

0

1

8

2

0

0

0

0

0

4

0

0

3

9

0

0

0

0

1

0

0

3

0

0

0

0

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

Intron__PSS

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

Intron__Seq

K

F

K

L

N

T

V

K

K

V

I

L

K

F

G

K

V

L

V

D

P

H

S

K

V

S

F

S

I

D

D

F

K

I

R

H

K

M

N

M

T

D

S

N

Y

T

P

D

E

I

-------

+

K

L

-

-

-

K

+

-

-

F

-

K

-

-

S

K

+

+

-

S

I

+

+

F

d1tfr_1_Seq

S

Y

K

L

P

P

R

G

K

I

Y

S

Y

F

V

K

A

.

.

.

G

L

S

K

L

T

N

S

I

N

E

F

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

d1tfr_1_SS

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

.

C

C

H

H

H

C

C

C

H

H

H

C

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

0

0

0

0

0

0

0

0

0

0

0

0

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

Intron__PSS

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1tfr_1_Seq

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d1tfr_1_SS

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CORE

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