Alignment of Intron_maturase_II with c1g4yb

Alignment of Intron_maturase_II with c1g4yb

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
c1g4yb__Seq	Library Sequence
c1g4yb__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	C	C	C		C	C	C	H	H	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	G	R	L	I	H	E		E	M	K	T	I	L	M	H	Y	L
-------																																							-	-	-	+	-			+	+	K	-	-	-	-		-	L
c1g4yb__Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	D	T	Q	L	T	K		R	V	K	N	A	A	A	N	V	L
c1g4yb__SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	C	H	H	H	H	H		H	H	H	H	H	H	H	H	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	0	0	0	2	0	0		0	5	0	0	9	4	0	0	9	0

Intron__PSS

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

.

.

H

C

C

C

H

H

H

H

H

Intron__Seq

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

Y

S

C

C

L

T

L

A

S

.

.

.

.

K

F

K

L

N

T

V

K

K

-------

-

-

-

-

-

I

-

+

-

+

L

-

-

-

-

-

+

-

R

-

-

-

-

-

F

-

-

-

+

L

-

S

-

K

L

N

-

-

-

c1g4yb__Seq

R

E

T

W

L

I

Y

K

N

T

K

L

V

K

K

I

D

H

A

K

V

R

K

H

Q

R

K

F

L

Q

A

I

H

Q

L

R

S

V

K

M

E

Q

R

K

L

N

D

Q

A

N

c1g4yb__SS

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

0

0

1

0

0

1

0

0

0

1

0

0

0

0

0

1

0

0

0

0

1

0

0

0

0

0

0

3

0

0

9

3

0

0

9

0

0

3

0

0

0

0

0

0

1

0

0

0

0

0

Intron__PSS		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	E	E	E		E	E	E	E	E	C	C	C	C	C		C	C	C	C	C	C	C	C	E	E		E	E	E	E	E	E	E	E	C	C
Intron__Seq		V	I	L	K	F	G	K	V	L	V		D	P	H	S	K	V	S	F	S	I		D	D	F	K	I	R	H	K	M	N		M	T	D	S	N	Y	T	P	D	E		I	L	D	R	Y	K	Y	M	L	P
-------		-	+	+	-			K		-			-	-	H	-	-
c1g4yb__Seq		T	L	V	D	L	A	K	T	Q	L		H	H	H	H	H	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
c1g4yb__SS		H	H	H	H	H	H	H	H	C	C		C	C	C	C	C	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

c1g4yb__Seq

.

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c1g4yb__SS

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CORE

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