Alignment of Intron_maturase_II with d1fipa

Alignment of Intron_maturase_II with d1fipa

PSSM Score Key
-10																			10

Bad																			Good

Alternative Interactive View of this alignment using Seaview

Don't Have Seaview?
FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1fipa__Seq	Library Sequence
d1fipa__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

C

.

C

H

H

H

H

H

H

Intron__Seq

H

T

S

L

V

V

N

A

P

I

R

S

I

V

M

K

L

N

K

H

G

Y

C

S

H

G

I

L

G

K

P

R

G

V

G

R

L

I

H

E

E

M

.

K

T

I

L

M

H

Y

-------

P

+

R

-

V

-

+

-

-

K

+

Y

-

+

+

+

-

-

-

-

+

-

+

+

-

-

L

+

-

E

+

-

+

L

-

-

-

d1fipa__Seq

.

.

.

.

.

.

.

.

P

L

R

D

S

V

K

Q

A

L

K

N

.

Y

F

A

Q

L

N

G

Q

D

V

N

D

L

Y

E

L

V

L

A

E

V

E

Q

A

L

L

D

M

V

d1fipa__SS

.

.

.

.

.

.

.

.

C

H

H

H

H

H

H

H

H

H

H

H

.

H

H

H

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

.

.

.

.

.

.

.

.

0

0

0

0

0

0

0

0

0

0

0

0

.

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

6

0

0

4

Intron__PSS

H

H

H

H

C

C

.

.

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

Intron__Seq

L

A

V

G

R

G

.

.

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

Y

S

C

C

L

T

L

A

S

K

F

K

L

N

T

V

K

K

V

-------

+

-

-

R

G

+

-

-

-

-

-

+

-

N

-

-

T

L

R

-

+

+

K

+

-

+

N

d1fipa__Seq

M

Q

Y

T

R

G

N

Q

T

R

A

A

L

M

M

G

I

N

R

G

T

L

R

K

K

L

K

.

.

.

.

.

.

.

.

.

.

.

.

.

K

Y

G

M

N

.

.

.

.

.

d1fipa__SS

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

.

H

H

C

C

C

.

.

.

.

.

CORE

5

0

0

2

0

1

0

1

0

0

9

5

0

1

4

0

4

0

0

0

0

9

0

0

0

4

0

.

.

.

.

.

.

.

.

.

.

.

.

.

0

0

0

2

0

.

.

.

.

.

Intron__PSS

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

Intron__Seq

I

L

K

F

G

K

V

L

V

D

P

H

S

K

V

S

F

S

I

D

D

F

K

I

R

H

K

M

N

M

T

D

S

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

-------

d1fipa__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

d1fipa__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

Intron__PSS

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1fipa__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

d1fipa__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.