Alignment of Intron_maturase_II with d1brwa

Alignment of Intron_maturase_II with d1brwa

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1brwa1_Seq	Library Sequence
d1brwa1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	C	C	C		C	C	C	H	H	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	G	R	L	I	H	E		E	M	K	T	I	L	M	H	Y	L
-------																																																				M	-	+	-
d1brwa1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	M	R	M	V
d1brwa1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	C	C	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	1	0	6	0

Intron__PSS

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

Intron__Seq

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

.

.

.

.

.

.

F

Y

S

C

C

L

T

L

A

S

K

F

K

L

N

T

V

-------

-

+

-

+

-

+

+

+

-

-

L

+

-

+

-

+

+

+

-

-

-

-

-

L

-

A

-

+

F

+

-

-

T

+

d1brwa1_Seq

D

L

I

A

K

K

R

D

G

K

A

L

.

.

T

K

E

E

I

E

W

I

V

R

G

Y

T

N

G

D

I

P

D

Y

Q

M

S

A

L

A

M

A

I

Y

F

R

G

M

T

E

d1brwa1_SS

H

H

H

H

H

H

H

H

C

C

C

C

.

.

C

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

CORE

0

5

2

0

0

1

0

0

0

0

0

9

.

.

0

0

0

0

6

0

1

9

3

0

1

0

0

0

0

0

6

0

0

0

0

4

0

1

7

0

0

1

1

0

0

0

0

5

0

0

Intron__PSS		H	H	H	H	H	H	H	H	H	H		H	C	C	C	C	C	C	C	C	E		E	E	E	E	E	E	E	C	C	C		C	C	C	C	C	C	C	C	C	C		E	E	E	E	E	E	E	E	E	E
Intron__Seq		K	K	V	I	L	K	F	G	K	V		L	V	D	P	H	S	K	V	S	F		S	I	D	D	F	K	I	R	H	K		M	N	M	T	D	S	N	Y	T	P		D	E	I	L	D	R	Y	K	Y	M
-------					+		-	+	-	+	+		+	V	+		-	-	+	+	-
d1brwa1_Seq		E	E	.	T	A	A	L	T	M	A		M	V	Q	S	G	E	M	L	D	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
d1brwa1_SS		H	H	.	H	H	H	H	H	H	H		H	H	H	H	C	C	C	C	C	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	1	.	1	0	2	3	0	0	4		0	0	0	0	0	0	0	0	0	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1brwa1_Seq

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d1brwa1_SS

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CORE

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