Alignment of Intron_maturase_II with d1aisb

Alignment of Intron_maturase_II with d1aisb

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1aisb1_Seq	Library Sequence
d1aisb1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	C	C	C		C	C	C	H	H	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	G	R	L	I	H	E		E	M	K	T	I	L	M	H	Y	L
-------																																																		-	L	-	+	+	L
d1aisb1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	N	L	A	F	A	L
d1aisb1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	H	H	H	H	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	0	0	0	0	2	0

Intron__PSS

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

.

H

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

.

.

H

H

H

H

H

Intron__Seq

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

.

L

F

Y

S

.

.

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.

.

.

.

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.

.

.

.

.

C

C

L

T

L

-------

-

-

-

-

I

-

-

+

+

L

-

+

+

-

-

+

+

+

+

+

+

+

+

C

+

-

+

d1aisb1_Seq

S

E

L

D

R

I

T

A

Q

L

K

L

P

R

H

.

.

V

E

E

E

A

A

R

L

Y

R

E

A

V

R

K

G

L

I

R

G

R

S

I

E

S

V

M

A

A

C

V

Y

A

d1aisb1_SS

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

CORE

0

0

5

0

0

5

0

0

0

3

0

3

0

0

0

.

.

3

0

0

0

9

2

0

8

1

0

0

4

0

0

0

0

2

0

0

0

0

0

2

0

0

4

4

4

2

5

8

0

6

Intron__PSS

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

C

C

C

C

C

C

C

C

E

E

E

E

Intron__Seq

A

S

K

.

.

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.

.

.

.

.

.

.

.

.

.

.

.

.

F

K

L

N

T

V

K

K

V

I

L

K

F

G

K

V

L

.

.

V

D

P

H

S

K

V

S

F

S

I

D

-------

A

+

+

+

-

-

+

+

+

-

+

+

-

+

L

+

+

+

-

d1aisb1_Seq

A

C

R

L

L

K

V

P

R

T

L

D

E

I

A

D

I

A

R

V

D

K

K

E

I

G

R

S

Y

R

F

I

A

R

N

L

N

L

T

P

K

K

L

F

.

.

.

.

.

.

d1aisb1_SS

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

.

.

.

.

.

.

CORE

7

2

0

4

1

0

1

0

0

0

0

0

0

4

0

0

1

1

0

0

0

0

0

0

1

0

0

1

1

0

0

5

3

0

0

1

0

6

0

0

0

0

4

0

.

.

.

.

.

.

Intron__PSS

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

D

F

K

I

R

H

K

M

N

M

T

D

S

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1aisb1_Seq

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d1aisb1_SS

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CORE

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