Alignment of Intron_maturase_II with d1d9ca

Alignment of Intron_maturase_II with d1d9ca

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1d9ca__Seq	Library Sequence
d1d9ca__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

C

E

E

C

C

C

C

C

C

H

H

H

Intron__Seq

H

T

S

L

V

V

N

A

P

I

R

S

I

V

M

K

L

N

K

H

G

Y

C

S

H

G

I

L

G

K

P

R

G

V

.

.

.

.

G

R

L

I

H

E

E

M

K

T

I

L

-------

+

+

+

-

-

+

-

+

L

+

-

-

-

S

+

-

-

+

K

-

-

-

+

-

+

-

-

-

+

E

-

+

-

+

d1d9ca__Seq

.

.

.

.

.

.

Q

G

Q

F

F

R

E

I

E

N

L

K

E

Y

F

N

A

S

S

P

D

V

A

K

G

G

P

L

F

S

E

I

L

K

N

W

K

D

E

S

D

K

K

I

d1d9ca__SS

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

CORE

.

.

.

.

.

.

0

0

0

2

0

0

1

2

0

1

9

0

0

0

3

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

1

1

0

0

0

0

0

0

0

0

0

0

0

Intron__PSS

H

H

H

H

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

.

.

.

.

.

.

H

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

H

H

H

H

H

H

Intron__Seq

M

H

Y

L

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

.

.

.

.

.

.

T

L

R

G

R

I

T

Y

I

L

F

.

.

.

.

.

.

Y

S

C

C

L

T

-------

+

-

-

-

-

V

-

-

-

-

+

-

-

L

-

-

N

-

+

+

+

+

-

+

-

-

-

+

-

-

-

+

-

d1d9ca__Seq

I

Q

S

Q

I

V

S

F

Y

F

K

L

F

E

N

L

K

D

N

Q

V

I

Q

R

S

M

D

I

I

K

Q

D

M

F

Q

K

F

L

N

G

S

S

E

K

L

E

D

F

K

K

d1d9ca__SS

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

CORE

1

0

3

0

2

5

3

0

0

4

0

0

5

0

0

5

0

0

0

0

0

6

0

0

4

5

0

1

7

0

0

0

3

1

0

0

4

3

0

0

0

0

0

0

3

0

0

6

0

0

Intron__PSS		H	H	H	H	C	C	C	.	.	.		H	H	H	H	H	H	H	H	H	H		H	H	H	H	C	C	C	C	C	C		C	C	E	E	E	E	E	E	E	E		C	C	C	C	C	C	C	C	C	C
Intron__Seq		L	A	S	K	F	K	L	.	.	.		N	T	V	K	K	V	I	L	K	F		G	K	V	L	V	D	P	H	S	K		V	S	F	S	I	D	D	F	K	I		R	H	K	M	N	M	T	D	S	N
-------		L	+		+	+		+					+	-	-		K		I	-				-	K	V	+	-	D	-	-
d1d9ca__Seq		L	I	.	Q	I	P	V	D	D	L		Q	I	Q	R	K	A	I	N	E	L		I	K	V	M	N	D	L	S	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
d1d9ca__SS		H	H	.	H	C	C	C	C	C	H		H	H	H	H	H	H	H	H	H	H		H	H	H	H	H	H	H	C	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	3	.	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	0	0		0	0	0	0	0	0	0	0	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1d9ca__Seq

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d1d9ca__SS

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CORE

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