Alignment of Intron_maturase_II with d1vin_

Alignment of Intron_maturase_II with d1vin_

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1vin_1_Seq	Library Sequence
d1vin_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

C

C

C

C

C

C

H

H

H

H

H

H

H

Intron__Seq

H

T

S

L

V

V

N

A

P

I

R

S

I

V

M

K

L

N

K

H

G

Y

C

S

H

G

I

L

G

K

P

R

G

V

G

R

L

I

H

E

E

M

K

T

I

L

M

H

Y

L

-------

-

I

-

-

+

+

-

+

-

-

-

+

+

G

-

+

-

K

-

+

-

I

-

+

M

I

L

-

L

d1vin_1_Seq

.

.

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.

.

D

I

H

T

Y

L

R

E

M

E

V

K

C

K

P

K

V

G

Y

M

K

K

Q

P

D

.

.

.

.

I

T

N

S

M

R

A

I

L

V

D

W

L

d1vin_1_SS

.

.

.

.

.

.

.

.

C

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

C

C

C

.

.

.

.

C

C

H

H

H

H

H

H

H

H

H

H

H

CORE

.

.

.

.

.

.

.

.

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

2

0

0

0

0

0

.

.

.

.

5

0

0

0

1

0

0

0

3

0

0

0

6

Intron__PSS

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

.

.

H

H

H

H

H

Intron__Seq

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

.

F

Y

S

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

L

T

L

-------

-

-

+

Y

+

L

-

T

L

-

-

-

+

+

Y

I

-

F

+

S

+

+

+

-

L

d1vin_1_Seq

V

E

V

.

.

.

G

E

E

Y

K

L

.

.

Q

N

E

T

L

H

L

A

V

N

Y

I

D

R

F

L

S

S

M

S

V

L

R

G

K

L

Q

L

V

G

T

A

A

M

L

L

d1vin_1_SS

H

H

H

.

.

.

H

H

H

H

C

C

.

.

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

0

0

5

.

.

.

2

0

0

0

0

6

.

.

0

0

0

3

3

0

1

8

0

0

2

6

0

0

6

7

0

0

0

0

9

0

0

0

0

6

0

2

9

3

2

3

5

7

2

4

Intron__PSS

H

H

H

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

C

C

C

C

C

C

C

C

E

E

Intron__Seq

A

S

K

.

.

.

.

.

.

.

.

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.

.

.

.

.

.

.

.

.

.

F

K

L

N

T

V

K

K

V

I

L

K

F

G

K

V

L

.

V

D

P

H

S

K

V

S

F

S

-------

A

S

K

+

-

V

+

-

+

-

-

K

V

L

-

D

-

-

+

d1vin_1_Seq

A

S

K

F

E

E

I

Y

P

P

E

V

A

E

F

V

Y

I

T

D

D

T

Y

T

K

K

Q

V

L

R

M

E

H

L

V

L

K

V

L

A

F

D

L

A

A

.

.

.

.

.

d1vin_1_SS

H

H

H

H

H

C

C

C

C

C

C

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

.

.

.

.

.

CORE

5

4

0

1

0

0

0

0

0

2

0

2

0

0

5

1

0

2

0

0

0

0

0

0

0

0

0

3

0

0

4

0

0

1

6

1

0

1

2

0

0

0

2

0

0

.

.

.

.

.

Intron__PSS

E

E

E

E

E

E

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

I

D

D

F

K

I

R

H

K

M

N

M

T

D

S

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1vin_1_Seq

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d1vin_1_SS

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CORE

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