Alignment of Intron_maturase_II with c1e6ia

Alignment of Intron_maturase_II with c1e6ia

PSSM Score Key
-10																			10

Bad																			Good

Alternative Interactive View of this alignment using Seaview

Don't Have Seaview?
FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
c1e6ia__Seq	Library Sequence
c1e6ia__SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

E

E

C

C

.

.

.

.

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

.

C

C

C

C

C

C

C

C

E

.

.

.

E

C

C

C

C

C

Intron__Seq

H

T

S

L

V

V

N

A

P

.

.

.

.

I

R

S

I

V

M

K

L

N

K

H

G

Y

C

S

H

G

I

.

L

G

K

P

R

G

V

G

R

.

.

.

L

I

H

E

E

M

-------

-

P

I

+

I

+

-

+

L

-

+

H

-

-

+

-

+

-

+

+

-

V

+

I

E

-

M

c1e6ia__Seq

.

.

.

.

.

.

R

G

P

H

D

A

A

I

Q

N

I

L

T

E

L

Q

N

H

A

A

A

W

P

F

L

Q

P

V

N

K

E

E

V

P

D

Y

Y

D

F

I

K

E

P

M

c1e6ia__SS

.

.

.

.

.

.

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

C

C

C

H

H

H

C

C

C

C

C

C

CORE

.

.

.

.

.

.

0

0

0

0

0

0

0

3

0

0

5

5

0

0

9

0

0

0

0

3

6

0

0

5

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

3

Intron__PSS

C

H

H

H

H

H

H

H

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

.

.

.

.

.

C

H

H

H

H

H

H

H

H

.

.

.

.

H

H

H

H

H

H

H

H

Intron__Seq

K

T

I

L

M

H

Y

L

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

.

.

.

.

.

T

T

L

R

G

R

I

T

Y

.

.

.

.

I

L

F

Y

S

C

C

L

-------

-

-

-

M

-

+

-

-

N

+

Y

+

-

+

-

F

+

-

-

+

Y

-

-

Y

+

c1e6ia__Seq

D

L

S

T

M

E

.

.

.

.

I

K

L

E

S

N

K

Y

Q

K

M

E

D

F

I

Y

D

A

R

L

V

F

N

N

C

R

M

Y

N

G

E

N

T

S

Y

Y

K

Y

A

N

c1e6ia__SS

C

H

H

H

H

H

.

.

.

.

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

H

H

H

H

H

H

H

CORE

0

9

0

0

7

0

.

.

.

.

0

0

2

0

0

0

0

1

0

0

3

0

0

6

3

0

0

4

0

0

6

4

0

0

1

0

0

0

0

0

0

0

0

0

0

0

0

0

3

0

Intron__PSS		H	H	H	H	H	C	C	C	H	H		H	H	H	H	H	H	H	H	H	H		H	H	C	C	C	C	C	C	C	C		E	E	E	E	E	E	E	E	C	C		C	C	C	C	C	C	C	C	C	C
Intron__Seq		T	L	A	S	K	F	K	L	N	T		V	K	K	V	I	L	K	F	G	K		V	L	V	D	P	H	S	K	V	S		F	S	I	D	D	F	K	I	R	H		K	M	N	M	T	D	S	N	Y	T
-------			L	-			F			N			V	K	+		I	-	+	+	-	-			+
c1e6ia__Seq		R	L	E	K	F	F	.	N	N	K		V	K	E	.	I	P	E	Y	S	H		L	I	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
c1e6ia__SS		H	H	H	H	H	H	.	H	H	H		H	H	H	.	C	H	H	H	H	H		H	C	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	8	0	0	1	6	.	0	0	0		4	0	0	.	1	0	0	0	0	0		1	3	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

c1e6ia__Seq

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

c1e6ia__SS

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

CORE

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.