Alignment of Intron_maturase_II with d1af7_

Alignment of Intron_maturase_II with d1af7_

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1af7_1_Seq	Library Sequence
d1af7_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	.	.	C	E	E	C		C	C	C	C	C	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	.	.	G	R	L	I		H	E	E	M	K	T	I	L	M	H
-------																																					+	V			-		-	-		-	+		-	+	+			-	H
d1af7_1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	S	V	L	L	Q	M	T	Q		R	L	A	L	S	D	.	.	A	H
d1af7_1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	C	C	C	C	C	C	C	C		C	C	C	C	C	H	.	.	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	0	0	0	0	0	0	0	0		0	2	0	5	0	0	.	.	0	0

Intron__PSS

H

H

H

H

H

C

C

H

H

H

H

.

.

C

C

C

C

C

C

C

C

H

.

H

H

H

H

H

H

H

H

H

H

.

.

.

.

.

.

.

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.

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H

H

H

H

H

H

H

Intron__Seq

Y

L

A

V

G

R

G

I

M

N

Y

.

.

Y

R

L

A

T

N

F

T

T

.

L

R

G

R

I

T

Y

I

L

F

.

.

.

.

.

.

.

.

.

.

Y

S

C

C

L

T

L

-------

+

-

+

+

+

-

I

-

-

-

-

-

L

A

-

-

+

+

-

+

R

-

-

-

L

+

+

S

-

L

d1af7_1_Seq

F

R

R

I

C

Q

L

I

Y

Q

R

A

G

I

V

L

A

D

H

K

R

D

M

V

Y

N

R

L

V

R

R

L

R

A

L

G

L

D

D

F

G

R

Y

L

S

.

.

.

M

L

d1af7_1_SS

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

.

.

.

H

H

CORE

3

0

0

9

1

0

2

4

0

0

0

0

0

1

0

7

0

0

0

0

0

0

1

7

0

0

0

6

1

0

0

1

0

0

0

0

0

0

0

4

0

0

1

3

0

.

.

.

0

1

Intron__PSS		H	H	H	C	C	C	H	H	H	H		H	H	H	H	H	H	H	H	H	H		C	C	C	C	C	C	C	C	E	E		E	E	E	E	E	E	C	C	C	C		C	C	C	C	C	C	C	C	C	E
Intron__Seq		A	S	K	F	K	L	N	T	V	K		K	V	I	L	K	F	G	K	V	L		V	D	P	H	S	K	V	S	F	S		I	D	D	F	K	I	R	H	K	M		N	M	T	D	S	N	Y	T	P	D
-------		-	-	-	-	-			-	-			+	+	I	-	-	+	-
d1af7_1_Seq		E	A	N	Q	N	S	A	E	W	Q		A	F	I	N	A	L	T	T	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
d1af7_1_SS		H	H	C	C	C	C	H	H	H	H		H	H	H	H	H	H	C	C	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	0	0	0	0	0	0	0	0	0		0	4	1	0	2	7	0	0	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1af7_1_Seq

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d1af7_1_SS

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CORE

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