Alignment of Intron_maturase_II with d1bu2a

Alignment of Intron_maturase_II with d1bu2a

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1bu2a1_Seq	Library Sequence
d1bu2a1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	C	C	C		C	C	C	H	H	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	G	R	L	I	H	E		E	M	K	T	I	L	M	H	Y	L
-------																																																	-	+	L	-	+	+	+
d1bu2a1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	R	V	L	N	N	L	K
d1bu2a1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	C	H	H	H	H	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	0	0	0	0	0	0	0

Intron__PSS

H

H

H

C

C

H

.

.

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

.

H

H

H

H

H

Intron__Seq

A

V

G

R

G

I

.

.

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

Y

S

C

C

L

T

L

A

S

K

F

K

L

N

.

T

V

K

K

V

-------

-

-

-

+

+

+

+

-

-

-

-

-

T

+

-

R

+

-

+

+

-

+

+

L

+

+

+

F

+

L

V

d1bu2a1_Seq

L

R

E

L

L

L

P

K

F

T

S

L

W

E

I

Q

T

E

V

T

V

D

N

R

T

I

L

L

T

W

.

.

.

M

H

L

L

C

E

S

F

E

L

D

K

S

V

F

P

L

d1bu2a1_SS

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

.

.

.

H

H

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

CORE

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

0

3

0

0

0

0

0

0

0

4

2

0

0

.

.

.

6

0

0

5

5

0

0

2

0

5

0

0

0

5

2

0

0

Intron__PSS

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

E

E

E

E

E

.

.

.

.

.

.

.

.

.

E

E

E

C

C

C

C

C

C

C

.

.

.

.

.

.

.

.

C

C

Intron__Seq

I

L

K

F

G

K

V

L

V

D

P

H

S

K

V

S

F

S

I

D

D

.

.

.

.

.

.

.

.

.

F

K

I

R

H

K

M

N

M

T

.

.

.

.

.

.

.

.

D

S

-------

-

+

-

+

-

-

+

-

-

+

+

-

+

-

-

-

K

I

R

-

M

T

+

-

d1bu2a1_Seq

S

V

S

I

L

D

R

Y

L

C

K

K

Q

G

T

K

K

T

L

Q

K

I

G

A

A

C

V

L

I

G

S

K

I

R

T

V

K

P

M

T

V

S

K

L

T

Y

L

S

C

D

d1bu2a1_SS

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

C

C

C

CORE

5

0

0

4

7

0

0

1

4

0

0

0

0

2

0

0

0

0

3

0

0

5

3

4

2

6

9

3

3

1

4

0

0

0

1

0

0

0

5

0

2

0

0

4

0

0

0

1

0

0

Intron__PSS

C

C

C

C

E

E

E

E

E

E

E

E

E

E

.

.

.

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

.

.

.

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

-

+

T

+

+

E

+

+

+

K

+

L

-

-

-

+

+

d1bu2a1_Seq

C

F

T

N

L

E

L

I

N

Q

E

K

D

I

L

E

A

L

K

W

D

T

E

.

.

.

.

.

.

.

.

.

.

.

.

d1bu2a1_SS

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

.

.

.

.

.

.

.

.

.

.

.

.

CORE

0

1

0

0

0

0

3

0

0

0

0

0

0

5

1

0

0

1

0

0

0

2

0

.

.

.

.

.

.

.

.

.

.

.

.