Alignment of Intron_maturase_II with d1a0p_

Alignment of Intron_maturase_II with d1a0p_

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1a0p_1_Seq	Library Sequence
d1a0p_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	C	C	C		C	C	C	H	H	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	G	R	L	I	H	E		E	M	K	T	I	L	M	H	Y	L
-------																																														-	+	-	-	-	+	+		+	L
d1a0p_1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		Q	D	L	A	R	I	E	Q	F	L
d1a0p_1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		H	H	H	H	H	H	H	H	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		0	0	1	0	0	5	0	0	1	1

Intron__PSS

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H

H

H

C

C

H

H

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H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

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.

Intron__Seq

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A

V

G

R

G

I

M

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N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

.

.

-------

A

-

-

R

+

+

+

+

R

+

-

T

-

-

T

-

-

-

-

L

d1a0p_1_Seq

D

A

L

W

L

E

K

N

L

A

E

N

T

L

N

A

Y

R

R

D

L

S

M

M

V

E

W

L

H

.

H

R

G

L

T

L

A

T

A

Q

S

D

D

L

Q

A

L

L

A

E

d1a0p_1_SS

H

H

H

H

H

H

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

C

CORE

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

5

1

0

7

3

0

0

6

0

.

0

0

0

3

0

8

0

0

7

0

1

0

0

9

0

0

3

3

0

0

Intron__PSS

H

H

H

H

H

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

C

C

C

C

C

C

Intron__Seq

F

Y

S

C

C

L

T

L

A

S

K

F

K

L

N

T

V

K

K

V

I

L

K

F

G

K

V

L

V

D

P

H

S

K

V

S

F

S

I

D

D

F

K

I

R

H

K

M

N

M

-------

+

+

S

-

+

+

-

L

+

-

V

+

+

+

-

-

-

L

-

-

+

-

+

-

+

+

-

-

-

-

+

d1a0p_1_Seq

R

L

S

S

A

R

L

L

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S

A

V

R

.

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R

L

F

Q

Y

L

Y

R

E

K

F

R

E

D

D

P

S

A

H

L

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d1a0p_1_SS

C

C

C

H

H

H

H

H

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H

H

H

H

.

.

.

.

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

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CORE

0

0

0

0

0

0

3

1

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.

0

2

8

0

.

.

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.

0

5

6

0

0

2

0

0

0

0

1

0

0

0

0

2

5

0

0

5

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.

Intron__PSS

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

T

D

S

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1a0p_1_Seq

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d1a0p_1_SS

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CORE

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