Alignment of Intron_maturase_II with d1a77_

Alignment of Intron_maturase_II with d1a77_

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1a77_1_Seq	Library Sequence
d1a77_1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS

C

C

E

E

E

E

E

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

.

.

.

.

.

E

E

C

C

C

C

.

.

C

C

Intron__Seq

H

T

S

L

V

V

N

A

P

I

R

S

I

V

M

K

L

N

K

H

G

Y

C

S

H

G

I

L

G

K

P

R

G

V

G

.

.

.

.

.

R

L

I

H

E

E

.

.

M

K

-------

-

+

-

-

+

+

-

-

-

-

-

G

+

+

-

+

+

-

G

-

+

G

+

G

L

+

+

+

-

+

d1a77_1_Seq

.

.

.

.

.

.

.

I

S

L

D

D

L

I

D

I

A

I

F

M

G

.

T

D

Y

N

P

G

G

V

K

.

G

I

G

F

K

R

A

Y

E

L

V

R

S

G

V

A

K

D

d1a77_1_SS

.

.

.

.

.

.

.

C

C

H

H

H

H

H

H

H

H

H

H

H

C

.

C

C

C

C

C

C

C

C

C

.

C

C

C

H

H

H

H

H

H

H

H

H

H

C

H

H

H

H

CORE

.

.

.

.

.

.

.

3

0

0

0

0

1

0

1

5

0

4

9

0

0

.

1

0

0

0

0

0

0

6

0

.

0

6

0

1

0

0

8

0

0

8

6

0

0

0

2

9

0

0

Intron__PSS

H

H

H

H

H

.

.

.

H

H

H

H

H

C

C

H

H

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

Intron__Seq

T

I

L

M

H

.

.

.

Y

L

A

V

G

R

G

I

M

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

Y

S

C

C

L

T

L

A

S

K

F

K

-------

+

+

-

+

Y

-

+

-

R

-

+

-

-

-

-

-

-

L

+

-

-

+

-

-

+

-

-

-

+

+

-

+

F

+

d1a77_1_Seq

V

L

K

K

E

V

E

Y

Y

D

E

I

K

R

I

F

K

E

P

K

V

T

D

N

Y

S

L

S

L

K

L

P

D

K

E

G

I

I

K

F

L

V

D

E

N

.

.

D

F

N

d1a77_1_SS

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

.

.

C

C

C

CORE

5

6

0

0

0

4

0

0

1

0

0

3

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

1

0

0

0

0

3

2

0

0

2

2

0

0

0

.

.

0

2

0

Intron__PSS		C	H	H	H	H	H	H	H	H	H		H	H	H	H	H	C	C	C	C	C		C	C	C	E	E	E	E	E	E	E		E	C	C	C	C	C	C	C	C	C		C	C	C	C	E	E	E	E	E	E
Intron__Seq		L	N	T	V	K	K	V	I	L	K		F	G	K	V	L	V	D	P	H	S		K	V	S	F	S	I	D	D	F	K		I	R	H	K	M	N	M	T	D	S		N	Y	T	P	D	E	I	L	D	R
-------		-	-	-	V	K	K	+	+	-	K				+	-	+	-	-	-	-
d1a77_1_Seq		Y	D	R	V	K	K	H	V	D	K		L	Y	N	L	I	A	N	K	T	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
d1a77_1_SS		H	H	H	H	H	H	H	H	H	H		H	H	H	H	H	H	H	H	C	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	0	0	4	0	0	0	2	0	0		1	0	0	0	1	0	0	0	0	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1a77_1_Seq

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d1a77_1_SS

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CORE

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