Alignment of Intron_maturase_II with d1vola

Alignment of Intron_maturase_II with d1vola

PSSM Score Key
-10																			10

Bad																			Good

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FASTA version

Intron__PSS	Predicted Secondary Structure for your Sequence
Intron__Seq	Your Sequence
d1vola1_Seq	Library Sequence
d1vola1_SS	Known Secondary Structure of the Library Sequence (Assigned by STRIDE)
CORE	A measure of the burial and number of contacts made by a residue. (9 very buried/making many contacts, 0 not buried/making few contacts

Intron__PSS		C	C	E	E	E	E	E	C	C	C		H	H	H	H	H	H	H	H	H	C		C	C	C	C	C	C	C	C	C	C		C	C	C	C	C	E	E	C	C	C		C	C	C	H	H	H	H	H	H	H
Intron__Seq		H	T	S	L	V	V	N	A	P	I		R	S	I	V	M	K	L	N	K	H		G	Y	C	S	H	G	I	L	G	K		P	R	G	V	G	R	L	I	H	E		E	M	K	T	I	L	M	H	Y	L
-------																																															M	+		-	+			-
d1vola1_Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		A	M	M	N	A	F	K	E	I	T
d1vola1_SS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		C	H	H	H	H	H	H	H	H	H
CORE		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.	.	.	.	.		0	0	0	0	1	0	0	0	4	0

Intron__PSS

H

H

H

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.

C

C

H

H

.

.

.

.

H

H

C

C

C

C

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

.

.

Intron__Seq

A

V

G

.

.

.

.

.

.

R

G

I

M

.

.

.

.

N

Y

Y

R

L

A

T

N

F

T

T

L

R

G

R

I

T

Y

I

L

F

Y

S

C

C

L

T

L

A

S

K

.

.

-------

-

+

+

R

-

+

+

N

+

+

R

A

-

-

L

+

G

R

-

+

-

-

S

+

C

L

-

+

A

+

+

d1vola1_Seq

T

M

A

D

R

I

N

L

P

R

N

K

V

D

R

T

N

N

L

F

R

Q

A

Y

E

Q

K

S

L

K

G

R

.

A

N

D

A

I

A

S

A

C

L

Y

I

A

C

R

Q

E

d1vola1_SS

H

H

H

H

H

H

C

C

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

C

C

C

C

C

C

C

C

C

.

C

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

H

CORE

0

3

4

0

0

0

0

3

0

0

0

0

3

0

0

3

0

0

3

4

0

0

9

0

0

0

0

0

7

0

0

0

.

1

0

0

2

7

3

5

7

6

5

1

4

2

2

0

0

0

Intron__PSS		.	.	.	.	.	.	.	.	.	.		.	.	.	.	C	C	C	H	H	H		H	H	H	H	H	H	H	H	H	H		H	.	.	.	C	C	C	C	C	C		C	C	E	E	E	E	E	E	E	E
Intron__Seq		.	.	.	.	.	.	.	.	.	.		.	.	.	.	F	K	L	N	T	V		K	K	V	I	L	K	F	G	K	V		L	.	.	.	V	D	P	H	S	K		V	S	F	S	I	D	D	F	K	I
-------																	+	-	-	+		+			+		-	+		-	-	K			L				V	D
d1vola1_Seq		G	V	P	R	T	F	K	E	I	C		A	V	S	R	I	S	K	K	E	I		G	R	C	F	K	L	I	L	K	A		L	E	T	S	V	D	.	.	.	.		.	.	.	.	.	.	.	.	.	.
d1vola1_SS		C	C	C	C	C	H	H	H	H	H		H	C	C	C	C	C	H	H	H	H		H	H	H	H	H	H	H	H	H	H		H	C	C	C	C	C	.	.	.	.		.	.	.	.	.	.	.	.	.	.
CORE		0	0	0	0	0	2	0	0	5	1		0	0	3	0	3	0	0	0	0	7		0	0	3	3	0	1	9	2	0	2		0	0	0	0	2	0	.	.	.	.		.	.	.	.	.	.	.	.	.	.

Intron__PSS

C

C

C

C

C

C

C

C

C

C

C

C

C

E

E

E

E

E

E

E

E

E

E

C

C

C

C

H

H

H

H

H

H

H

H

H

H

H

C

C

C

Intron__Seq

R

H

K

M

N

M

T

D

S

N

Y

T

P

D

E

I

L

D

R

Y

K

Y

M

L

P

R

S

L

S

L

F

S

G

I

C

Q

I

C

G

S

K

-------

d1vola1_Seq

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d1vola1_SS

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CORE

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