Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO32583
DateThu Jan 5 10:56:31 GMT 2012
Unique Job IDba8c6defa8d48473

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2kl0A_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
Confidence and coverage
Confidence: 99.9% Coverage: 98%
65 residues ( 98% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQILFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLF
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 
   ......
Sequence  QVIAGG
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2kl0 chain A

3D model

Region: 1 - 66
Aligned: 65
Modelled: 66
Confidence: 99.9%
Identity: 29%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325

Phyre2

PDB 1zud chain 2 domain 1

3D model

Region: 2 - 66
Aligned: 65
Modelled: 65
Confidence: 99.9%
Identity: 100%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: ThiS

Phyre2

PDB 3cwi chain A

3D model

Region: 1 - 66
Aligned: 66
Modelled: 65
Confidence: 99.8%
Identity: 24%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137

Phyre2

PDB 2cu3 chain A domain 1

3D model

Region: 3 - 65
Aligned: 62
Modelled: 63
Confidence: 99.8%
Identity: 21%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: ThiS

Phyre2

PDB 1tyg chain B

3D model

Region: 3 - 65
Aligned: 63
Modelled: 63
Confidence: 99.8%
Identity: 17%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: ThiS

Phyre2

PDB 1tyg chain G

3D model

Region: 3 - 64
Aligned: 62
Modelled: 62
Confidence: 99.8%
Identity: 16%
PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex

Phyre2

PDB 2g1e chain A

3D model

Region: 6 - 66
Aligned: 61
Modelled: 61
Confidence: 98.2%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ta0895;
PDBTitle: solution structure of ta0895

Phyre2

PDB 2qie chain B

3D model

Region: 8 - 66
Aligned: 55
Modelled: 59
Confidence: 98.2%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase small subunit;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z

Phyre2

PDB 3po0 chain A

3D model

Region: 8 - 66
Aligned: 55
Modelled: 59
Confidence: 97.9%
Identity: 22%
PDB header:protein binding
Chain: A: PDB Molecule:small archaeal modifier protein 1;
PDBTitle: crystal structure of samp1 from haloferax volcanii

Phyre2

PDB 1v8c chain A domain 1

3D model

Region: 7 - 66
Aligned: 60
Modelled: 60
Confidence: 97.8%
Identity: 25%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: MoaD

Phyre2

PDB 3rpf chain C

3D model

Region: 14 - 66
Aligned: 50
Modelled: 53
Confidence: 97.7%
Identity: 26%
PDB header:transferase
Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad);
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695

Phyre2

PDB 1fm0 chain D

3D model

Region: 8 - 66
Aligned: 54
Modelled: 59
Confidence: 97.6%
Identity: 28%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: MoaD

Phyre2

PDB 2qjl chain A

3D model

Region: 9 - 66
Aligned: 58
Modelled: 58
Confidence: 97.6%
Identity: 26%
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin-related modifier 1;
PDBTitle: crystal structure of urm1

Phyre2

PDB 2l52 chain A

3D model

Region: 7 - 66
Aligned: 60
Modelled: 60
Confidence: 97.5%
Identity: 20%
PDB header:protein binding
Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog;
PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans

Phyre2

PDB 1xo3 chain A

3D model

Region: 13 - 66
Aligned: 54
Modelled: 54
Confidence: 97.4%
Identity: 30%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: C9orf74 homolog

Phyre2

PDB 1vjk chain A

3D model

Region: 8 - 63
Aligned: 52
Modelled: 56
Confidence: 97.4%
Identity: 23%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: MoaD

Phyre2

PDB 2k9x chain A

3D model

Region: 9 - 66
Aligned: 58
Modelled: 58
Confidence: 97.4%
Identity: 21%
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of urm1 from trypanosoma brucei

Phyre2

PDB 1wgk chain A

3D model

Region: 13 - 66
Aligned: 54
Modelled: 54
Confidence: 97.3%
Identity: 24%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: MoaD/ThiS
Family: C9orf74 homolog

Phyre2

PDB 1v8c chain A

3D model

Region: 7 - 66
Aligned: 60
Modelled: 60
Confidence: 97.3%
Identity: 28%
PDB header:protein binding
Chain: A: PDB Molecule:moad related protein;
PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8

Phyre2

PDB 3dwm chain A

3D model

Region: 6 - 63
Aligned: 58
Modelled: 58
Confidence: 97.2%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a;
PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen

Phyre2
1
c2kl0A_
2
d1zud21
3
c3cwiA_
4
d2cu3a1
5
d1tygb_
6
c1tygG_
7
c2g1eA_
8
c2qieB_
9
c3po0A_
10
d1v8ca1
11
c3rpfC_
12
d1fm0d_
13
c2qjlA_
14
c2l52A_
15
d1xo3a_
16
d1vjka_
17
c2k9xA_
18
d1wgka_
19
c1v8cA_
20
c3dwmA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kl0A_
99.9 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
2d1zud21
99.9 100 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
3c3cwiA_
99.8 24 PDB header:biosynthetic protein
Chain: A: PDB Molecule:thiamine-biosynthesis protein this;
PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137
4d2cu3a1
99.8 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
5d1tygb_
99.8 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
6c1tygG_
99.8 16 PDB header:biosynthetic protein
Chain: G: PDB Molecule:yjbs;
PDBTitle: structure of the thiazole synthase/this complex
7c2g1eA_
98.2 23 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ta0895;
PDBTitle: solution structure of ta0895
8c2qieB_
98.2 20 PDB header:transferase
Chain: B: PDB Molecule:molybdopterin synthase small subunit;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z
9c3po0A_
97.9 22 PDB header:protein binding
Chain: A: PDB Molecule:small archaeal modifier protein 1;
PDBTitle: crystal structure of samp1 from haloferax volcanii
10d1v8ca1
97.8 25 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
11c3rpfC_
97.7 26 PDB header:transferase
Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad);
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695
12d1fm0d_
97.6 28 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
13c2qjlA_
97.6 26 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin-related modifier 1;
PDBTitle: crystal structure of urm1
14c2l52A_
97.5 20 PDB header:protein binding
Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog;
PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans
15d1xo3a_
97.4 30 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:C9orf74 homolog
16d1vjka_
97.4 23 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:MoaD
17c2k9xA_
97.4 21 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of urm1 from trypanosoma brucei
18d1wgka_
97.3 24 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:C9orf74 homolog
19c1v8cA_
97.3 28 PDB header:protein binding
Chain: A: PDB Molecule:moad related protein;
PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8
20c3dwmA_
97.2 19 PDB header:transferase
Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a;
PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen
21d1ryja_
not modelled 97.2 29 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
22c2kmmA_
not modelled 97.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'-
PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481)
23d1rwsa_
not modelled 96.9 24 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:ThiS
24c3hvzB_
not modelled 96.1 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a
25d1tkea1
not modelled 95.3 11 Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
26d3c8ya2
not modelled 94.9 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
27d1vlba2
not modelled 94.8 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
28c1wwtA_
not modelled 94.4 5 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic;
PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
29c1c4cA_
not modelled 93.6 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
30c2hj1A_
not modelled 93.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae
31d2hj1a1
not modelled 93.5 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:HI0395-like
32c1nyqA_
not modelled 92.6 17 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase 1;
PDBTitle: structure of staphylococcus aureus threonyl-trna synthetase2 complexed with an analogue of threonyl adenylate
33d1dgja2
not modelled 91.9 9 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
34d1t3qa2
not modelled 91.4 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
35d1n62a2
not modelled 91.2 11 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
36d1ffva2
not modelled 89.9 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
37d2fug33
not modelled 89.7 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
38d1rm6c2
not modelled 89.0 7 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
39d1ud7a_
not modelled 88.0 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
40d1wxqa2
not modelled 88.0 19 Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
41c1tkeA_
not modelled 87.8 11 PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase complexed with serine
42c1yx5B_
not modelled 86.1 14 PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin;
PDBTitle: solution structure of s5a uim-1/ubiquitin complex
43d1c3ta_
not modelled 85.7 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
44c2ekiA_
not modelled 84.2 15 PDB header:signaling protein
Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1;
PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1
45c1n60D_
not modelled 83.8 12 PDB header:oxidoreductase
Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain;
PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
46c1t3qD_
not modelled 82.9 7 PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
47d1nyra2
not modelled 80.7 16 Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
48c2fugC_
not modelled 79.1 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
49c1ffuA_
not modelled 78.7 17 PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
50c3hrdH_
not modelled 78.5 15 PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
51d1euvb_
not modelled 76.3 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
52c1rm6F_
not modelled 75.5 7 PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
53c1qf6A_
not modelled 73.4 13 PDB header:ligase/rna
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: structure of e. coli threonyl-trna synthetase complexed with its2 cognate trna
54d1uela_
not modelled 72.8 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
55c1vlbA_
not modelled 72.8 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
56d1ogwa_
not modelled 72.1 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
57d1wm3a_
not modelled 71.5 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
58c2kd0A_
not modelled 70.9 20 PDB header:signaling protein
Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing
PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a
59d1wgga_
not modelled 69.7 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
60d1jroa2
not modelled 69.4 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
61d1v97a2
not modelled 69.4 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
62d1v86a_
not modelled 66.5 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
63c3tixA_
not modelled 64.4 12 PDB header:gene regulation/protein binding
Chain: A: PDB Molecule:ubiquitin-like protein smt3, rna-induced transcriptional
PDBTitle: crystal structure of the chp1-tas3 complex core
64d1bt0a_
not modelled 63.2 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
65c3a4rB_
not modelled 63.0 15 PDB header:transcription
Chain: B: PDB Molecule:nfatc2-interacting protein;
PDBTitle: the crystal structure of sumo-like domain 2 in nip45
66d2io3b1
not modelled 60.7 21 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
67d1we7a_
not modelled 59.8 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
68d1ndda_
not modelled 59.3 13 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
69c1dgjA_
not modelled 59.3 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
70c2jxxA_
not modelled 58.1 13 PDB header:protein binding
Chain: A: PDB Molecule:nfatc2-interacting protein;
PDBTitle: nmr solution structure of ubiquitin-like domain of2 nfatc2ip. northeast structural genomics consortium target3 hr5627
71d1wh3a_
not modelled 57.8 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
72c3pgeA_
not modelled 57.1 12 PDB header:dna binding protein
Chain: A: PDB Molecule:sumo-modified proliferating cell nuclear antigen;
PDBTitle: structure of sumoylated pcna
73c3goeA_
not modelled 54.6 17 PDB header:recombination, replication
Chain: A: PDB Molecule:dna repair protein rad60;
PDBTitle: molecular mimicry of sumo promotes dna repair
74c3eubJ_
not modelled 53.7 18 PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
75c3b9jI_
not modelled 52.8 18 PDB header:oxidoreductase
Chain: I: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
76d2faza1
not modelled 52.6 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
77d1sifa_
not modelled 52.5 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
78c2kanA_
not modelled 51.6 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ar3433a;
PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a
79d2uyzb1
not modelled 51.6 12 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
80c2k8hA_
not modelled 51.2 10 PDB header:signaling protein
Chain: A: PDB Molecule:small ubiquitin protein;
PDBTitle: solution structure of sumo from trypanosoma brucei
81c2ekeC_
not modelled 51.1 10 PDB header:ligase/protein binding
Chain: C: PDB Molecule:ubiquitin-like protein smt3;
PDBTitle: structure of a sumo-binding-motif mimic bound to smt3p-2 ubc9p: conservation of a noncovalent ubiquitin-like3 protein-e2 complex as a platform for selective4 interactions within a sumo pathway
82d2piea1
not modelled 47.7 21 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
83d2g1la1
not modelled 47.3 23 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
84d1a5ra_
not modelled 46.6 14 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
85d1gxca_
not modelled 46.6 17 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
86c1gxcA_
not modelled 46.6 17 PDB header:phosphoprotein-binding domain
Chain: A: PDB Molecule:serine/threonine-protein kinase chk2;
PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide
87c2l76A_
not modelled 46.4 9 PDB header:transcription
Chain: A: PDB Molecule:nfatc2-interacting protein;
PDBTitle: solution nmr structure of human nfatc2ip ubiquitin-like domain,2 nfatc2ip_244_338, nesg target ht65a/ocsp target hs00387_244_338/sgc-3 toronto
88d1wz0a1
not modelled 45.4 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
89d1v5oa_
not modelled 44.1 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
90d1yfba1
not modelled 44.0 14 Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
91c2l7rA_
not modelled 43.3 15 PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-like protein fubi;
PDBTitle: solution nmr structure of n-terminal ubiquitin-like domain of fubi, a2 ribosomal protein s30 precursor from homo sapiens. northeast3 structural genomics consortium (nesg) target hr6166
92d1j8ca_
not modelled 42.8 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
93c3dh3C_
not modelled 42.7 12 PDB header:isomerase/rna
Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f;
PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
94d1g3ga_
not modelled 42.4 25 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
95c2eh0A_
not modelled 41.0 18 PDB header:transport protein
Chain: A: PDB Molecule:kinesin-like protein kif1b;
PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b
96c3lzkC_
not modelled 40.8 10 PDB header:hydrolase
Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein;
PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021
97c3kt9A_
not modelled 40.3 17 PDB header:hydrolase
Chain: A: PDB Molecule:aprataxin;
PDBTitle: aprataxin fha domain
98d2fy9a1
not modelled 40.2 23 Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:AbrB N-terminal domain-like
99d1iyfa_
not modelled 40.0 7 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
100c3hx1B_
not modelled 39.4 30 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:slr1951 protein;
PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a
101c2w3rG_
not modelled 38.5 18 PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
102d1yjma1
not modelled 38.4 13 Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
103c3jxoB_
not modelled 37.0 20 PDB header:transport protein
Chain: B: PDB Molecule:trka-n domain protein;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
104c2w1tB_
not modelled 37.0 23 PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: crystal structure of b. subtilis spovt
105d1wy8a1
not modelled 36.8 23 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
106d1p9ka_
not modelled 36.7 18 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
107c3fm8A_
not modelled 36.4 27 PDB header:transport protein/hydrolase activator
Chain: A: PDB Molecule:kinesin-like protein kif13b;
PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target)
108c2ro5B_
not modelled 36.4 23 PDB header:transcription
Chain: B: PDB Molecule:stage v sporulation protein t;
PDBTitle: rdc-refined solution structure of the n-terminal dna2 recognition domain of the bacillus subtilis transition-3 state regulator spovt
109c2glwA_
not modelled 35.3 19 PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
110d1dm9a_
not modelled 33.5 24 Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Heat shock protein 15 kD
111c1dm9A_
not modelled 33.5 24 PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka
PDBTitle: heat shock protein 15 kd
112d1zkha1
not modelled 33.2 16 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
113c2bknA_
not modelled 33.0 16 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein ph0236;
PDBTitle: structure analysis of unknown function protein
114c2jqlA_
not modelled 31.2 26 PDB header:cell cycle
Chain: A: PDB Molecule:dna damage response protein kinase dun1;
PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1
115c3m62B_
not modelled 31.1 15 PDB header:ligase/protein binding
Chain: B: PDB Molecule:uv excision repair protein rad23;
PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of rad23
116c2dziA_
not modelled 31.0 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: 2dzi/solution structure of the n-terminal ubiquitin-like2 domain in human ubiquitin-like protein 4a (gdx)
117c1yj5C_
not modelled 28.5 14 PDB header:transferase
Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain;
PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
118c2kdiA_
not modelled 27.8 10 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin, vacuolar protein sorting-associated
PDBTitle: solution structure of a ubiquitin/uim fusion protein
119d1vcta2
not modelled 27.4 16 Fold:TrkA C-terminal domain-like
Superfamily:TrkA C-terminal domain-like
Family:TrkA C-terminal domain-like
120d1oqya4
not modelled 27.4 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0