PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3dh3C_

Fold library id	PDB Header	Molecule	Title
c3dh3C_	PDB header: isomerase/rna	Chain: C: PDB Molecule: ribosomal large subunit pseudouridine synthase f;	PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate

Links to external resources
Added to library: Sat Aug 28 18:56:01 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D S S V R L N K Y I S E S G I C S R R E A D R Y I E Q G N V F L N G K R A T I G D Q V K P G D V V K V N G Q L I E P R E A E D L V L I A L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S
T T
T T
T T
T T
T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K P V G I V S T T E D G E R D N I V D F V N H S K R V F P I G R L D K D S Q G L I F L T N H G D L V N K I L R A G N D H E K E Y L V T V D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
S S
T T B T
S S
S S
T T
S
T
G G G
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P I T E E F I R G M S A G V P I L G T V T K K C K V K K E A P F V F R I T L V Q G L N R Q I R R M C E H F G Y E V K K L E R T R I M N V S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
B
S S S B
S S S S
T T T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence S G I P L G E W R D L T D D E L I D L F K L I E N S S S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	S	S	V	R	L	N	K	Y	I	S	E	S	G	I	C	S	R	R	E	A	D	R	Y	I	E	Q	G	N	V	F	L	N	G	K	R	A	T	I	G	D	Q	V	K	P	G	D	V	V	K	V	N	G	Q	L	I	E	P	R	E	A	E	D	L	V	L	I	A	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T	S	S											T	T					T	T					T	T					T	T						T	T								G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	P	V	G	I	V	S	T	T	E	D	G	E	R	D	N	I	V	D	F	V	N	H	S	K	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L	I	F	L	T	N	H	G	D	L	V	N	K	I	L	R	A	G	N	D	H	E	K	E	Y	L	V	T	V	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		B					S	S		T	T	B						T		S	S					S	S				T	T									S		T									G	G	G											S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	I	T	E	E	F	I	R	G	M	S	A	G	V	P	I	L	G	T	V	T	K	K	C	K	V	K	K	E	A	P	F	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I	R	R	M	C	E	H	F	G	Y	E	V	K	K	L	E	R	T	R	I	M	N	V	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T			B		S	S	S	B										S	S	S							S				T	T									T	T												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	S	G	I	P	L	G	E	W	R	D	L	T	D	D	E	L	I	D	L	F	K	L	I	E	N	S	S	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			T	T																T					S