Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	C	S	W	R	E	G	N	K	I	Q	L	L	E	N	G	E	Q	Y	Y	P	A	V	F	K	A	I	G	E	A	Q	E	R	I	I	L	E	T	F	I	W	F	E	D	D	V	G	K	Q	L	H	A	A	L	L	A	A	A	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	G	V	K	A	E	V	L	L	D	G	Y	G	S	P	D	L	S	D	E	F	V	N	E	L	T	A	A	G	V	V	F	R	Y	Y	D	P	R	P	R	L	F	G	M	R	T	N	V	F	R	R	M	H	R	K	I	V	V	I	D
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	R	I	A	F	I	G	G	L	N	Y	S	A	E	H	M	S	S	Y	G	P	E	A	K	Q	D	Y	A	V	R	L	E	G	P	I	V	E	D	I	L	Q	F	E	L	E	N	L	P	G	Q	S	A	A	R	R	W	W	R	R	H
Secondary structure
SS confidence
Disorder																			?	?		?																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		H	K	A	E	E	N	R	Q	P	G	E	A	Q	V	L	L	V	W	R	D	N	E	E	H	R	D	D	I	E	R	H	Y	L	K	M	L	T	Q	A	R	R	E	V	I	I	A	N	A	Y	F	F	P	G	Y	R	F	L	H	A	L
Secondary structure
SS confidence
Disorder				?																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	K	A	A	R	R	G	V	R	I	K	L	I	I	Q	G	E	P	D	M	P	I	V	R	V	G	A	R	L	L	Y	N	Y	L	V	K	G	G	V	Q	V	F	E	Y	R	R	R	P	L	H	G	K	V	A	L	M	D	D	H	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	T	V	G	S	S	N	L	D	P	L	S	L	S	L	N	L	E	A	N	V	I	I	H	D	R	H	F	N	Q	T	L	R	D	N	L	N	G	I	I	A	A	D	C	Q	Q	V	D	E	T	M	L	P	K	R	T	W	W	N	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Sequence		T	K	S	V	L	A	F	H	F	L	R	H	F	P	A	L	V	G	W	L	P	A	H	T	P	R	L	A	Q	V	D	P	P	A	Q	P	T	M	E	T	Q	D	R	V	E	T	E	N	T	G	V	K	P
Secondary structure
SS confidence
Disorder																													?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3hsi chain C Region: 1 - 367 Aligned: 364 Modelled: 361 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 Phyre2 PDB 1v0s chain A Region: 7 - 354 Aligned: 344 Modelled: 341 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf Phyre2 PDB 1xdo chain B Region: 13 - 343 Aligned: 285 Modelled: 301 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase Phyre2 PDB 1v0w chain A domain 1 Region: 16 - 190 Aligned: 174 Modelled: 175 Confidence: 100.0% Identity: 16% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Phospholipase D Phyre2 PDB 1xdp chain A domain 3 Region: 196 - 350 Aligned: 151 Modelled: 155 Confidence: 99.9% Identity: 15% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1byr chain A Region: 189 - 343 Aligned: 145 Modelled: 152 Confidence: 99.9% Identity: 19% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Nuclease Phyre2 PDB 2o8r chain A Region: 13 - 343 Aligned: 281 Modelled: 301 Confidence: 99.9% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Phyre2 PDB 1v0w chain A domain 2 Region: 172 - 353 Aligned: 179 Modelled: 174 Confidence: 99.9% Identity: 16% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Phospholipase D Phyre2 PDB 2o8r chain A domain 3 Region: 196 - 339 Aligned: 138 Modelled: 144 Confidence: 99.0% Identity: 12% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1xdp chain A domain 4 Region: 201 - 343 Aligned: 130 Modelled: 143 Confidence: 99.0% Identity: 15% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 2o8r chain A domain 4 Region: 200 - 343 Aligned: 130 Modelled: 131 Confidence: 98.7% Identity: 18% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1q32 chain C Region: 105 - 323 Aligned: 219 Modelled: 219 Confidence: 98.4% Identity: 12% PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase Phyre2 PDB 3sq3 chain C Region: 105 - 323 Aligned: 219 Modelled: 218 Confidence: 98.1% Identity: 13% PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant Phyre2 PDB 2c1l chain A Region: 236 - 325 Aligned: 87 Modelled: 90 Confidence: 97.7% Identity: 25% PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease Phyre2 PDB 1jy1 chain A domain 2 Region: 285 - 323 Aligned: 39 Modelled: 39 Confidence: 96.8% Identity: 23% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 1nop chain B Region: 285 - 323 Aligned: 39 Modelled: 39 Confidence: 96.7% Identity: 28% PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide Phyre2 PDB 1q32 chain A domain 2 Region: 289 - 323 Aligned: 35 Modelled: 35 Confidence: 96.4% Identity: 29% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 1qzq chain A domain 1 Region: 33 - 144 Aligned: 95 Modelled: 112 Confidence: 90.6% Identity: 12% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 1jy1 chain A domain 1 Region: 61 - 144 Aligned: 75 Modelled: 84 Confidence: 81.0% Identity: 11% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 2f5t chain X domain 2 Region: 18 - 76 Aligned: 55 Modelled: 59 Confidence: 78.8% Identity: 15% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: TrmB middle domain-like Phyre2 1 c3hsiC_ 2 c1v0sA_ 3 c1xdoB_ 4 d1v0wa1 5 d1xdpa3 6 d1byra_ 7 c2o8rA_ 8 d1v0wa2 9 d2o8ra3 10 d1xdpa4 11 d2o8ra4 12 c1q32C_ 13 c3sq3C_ 14 c2c1lA_ 15 d1jy1a2 16 c1nopB_ 17 d1q32a2 18 d1qzqa1 19 d1jy1a1 20 d2f5tx2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hsiC_ 100.0 15 PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 2 c1v0sA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf 3 c1xdoB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 4 d1v0wa1 100.0 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 5 d1xdpa3 99.9 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 6 d1byra_ 99.9 19 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Nuclease 7 c2o8rA_ 99.9 20 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 8 d1v0wa2 99.9 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 9 d2o8ra3 99.0 12 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 10 d1xdpa4 99.0 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 11 d2o8ra4 98.7 18 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 12 c1q32C_ 98.4 12 PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase 13 c3sq3C_ 98.1 13 PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant 14 c2c1lA_ 97.7 25 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease 15 d1jy1a2 96.8 23 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 16 c1nopB_ 96.7 28 PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide 17 d1q32a2 96.4 29 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 18 d1qzqa1 90.6 12 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 19 d1jy1a1 81.0 11 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 20 d2f5tx2 78.8 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:TrmB middle domain-like 21 c2f5tX_ not modelled 71.8 15 PDB header:transcription Chain: X: PDB Molecule:archaeal transcriptional regulator trmb; PDBTitle: crystal structure of the sugar binding domain of the archaeal2 transcriptional regulator trmb 22 d1q32a1 not modelled 66.5 10 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 23 c2l82A_ not modelled 42.6 19 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 24 c2a5hC_ not modelled 36.5 21 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 25 d1o98a1 not modelled 34.2 26 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 26 c2o48X_ not modelled 30.1 12 PDB header:oxidoreductase Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase; PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase 27 d1rvga_ not modelled 28.0 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 28 d1gvfa_ not modelled 26.2 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 29 d1gz0a2 not modelled 20.0 24 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 30 c2hqbA_ not modelled 17.8 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional activator of comk gene; PDBTitle: crystal structure of a transcriptional activator of comk2 gene from bacillus halodurans 31 c1t3gB_ not modelled 17.3 18 PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl 32 c3dy0B_ not modelled 16.7 33 PDB header:blood clotting, hydrolase inhibitor Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved pci bound to heparin 33 c3kgkA_ not modelled 16.2 13 PDB header:chaperone Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd; PDBTitle: crystal structure of arsd 34 c3rfuC_ not modelled 15.5 21 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 35 c3ecsD_ not modelled 15.5 13 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 36 c1lq8H_ not modelled 15.4 33 PDB header:blood clotting Chain: H: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved protein c inhibitor 37 c2rjoA_ not modelled 15.1 16 PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans 38 c3gbcA_ not modelled 15.1 19 PDB header:hydrolase Chain: A: PDB Molecule:pyrazinamidase/nicotinamidas pnca; PDBTitle: determination of the crystal structure of the pyrazinamidase from2 m.tuberculosis : a structure-function analysis for prediction3 resistance to pyrazinamide 39 c2nytB_ not modelled 14.4 12 PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid 40 d1gz0f2 not modelled 14.2 24 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 41 c3db2C_ not modelled 13.7 10 PDB header:oxidoreductase Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution 42 c3s99A_ not modelled 13.2 19 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 43 c3h75A_ not modelled 12.4 10 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 44 c2kjwA_ not modelled 11.9 12 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 45 d1bdga1 not modelled 11.9 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 46 c1o98A_ not modelled 11.1 26 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 47 d1acoa2 not modelled 11.0 14 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 48 d2obba1 not modelled 11.0 11 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 49 c2q4eB_ not modelled 10.8 11 PDB header:oxidoreductase Chain: B: PDB Molecule:probable oxidoreductase at4g09670; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670 50 c2glxD_ not modelled 9.9 13 PDB header:oxidoreductase Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase; PDBTitle: crystal structure analysis of bacterial 1,5-af reductase 51 c2kl8A_ not modelled 9.4 24 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 52 c3igzB_ not modelled 9.3 26 PDB header:isomerase Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase; PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration 53 d1un8a4 not modelled 9.2 16 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DAK1 54 d1vb5a_ not modelled 9.2 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 55 c2r60A_ not modelled 8.8 28 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 56 c2ixaA_ not modelled 8.4 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 57 c2b34C_ not modelled 8.3 21 PDB header:hydrolase Chain: C: PDB Molecule:mar1 ribonuclease; PDBTitle: structure of mar1 ribonuclease from caenorhabditis elegans 58 d1ydwa1 not modelled 8.2 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 59 d1x94a_ not modelled 8.2 13 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 60 c3oziB_ not modelled 8.0 20 PDB header:plant protein Chain: B: PDB Molecule:l6tr; PDBTitle: crystal structure of the tir domain from the flax disease resistance2 protein l6 61 c2wltA_ not modelled 7.9 18 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 62 c2klnA_ not modelled 7.7 11 PDB header:transport protein Chain: A: PDB Molecule:probable sulphate-transport transmembrane protein, cog0659; PDBTitle: solution structure of stas domain of rv1739c from m. tuberculosis 63 c2x7mA_ not modelled 7.7 8 PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution 64 c3l2iB_ not modelled 7.5 12 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. 65 c2krcA_ not modelled 7.4 8 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 66 c2j37W_ not modelled 7.1 11 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 67 d1yaca_ not modelled 7.1 21 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 68 c3a11D_ not modelled 6.9 17 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 69 c2y92A_ not modelled 6.7 10 PDB header:immune system Chain: A: PDB Molecule:toll/interleukin-1 receptor domain-containing adapter PDBTitle: crystal structure of mal adaptor protein 70 c3euwB_ not modelled 6.6 12 PDB header:oxidoreductase Chain: B: PDB Molecule:myo-inositol dehydrogenase; PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032 71 c1yd6A_ not modelled 6.6 20 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 72 c2d6fA_ not modelled 6.6 14 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 73 d1v4sa1 not modelled 6.5 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 74 c5acnA_ not modelled 6.4 16 PDB header:lyase(carbon-oxygen) Chain: A: PDB Molecule:aconitase; PDBTitle: structure of activated aconitase. formation of the (4fe-4s)2 cluster in the crystal 75 c2iksA_ not modelled 6.2 11 PDB header:transcription Chain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12 76 d1nnsa_ not modelled 6.2 19 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 77 c3brsA_ not modelled 6.2 17 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 78 c3hvbB_ not modelled 6.1 14 PDB header:hydrolase Chain: B: PDB Molecule:protein fimx; PDBTitle: crystal structure of the dual-domain ggdef-eal module of2 fimx from pseudomonas aeruginosa 79 c3pm6B_ not modelled 5.8 16 PDB header:lyase Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase; PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr 80 c3i5mA_ not modelled 5.8 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putative leucoanthocyanidin reductase 1; PDBTitle: structure of the apo form of leucoanthocyanidin reductase from vitis2 vinifera 81 c1l5jB_ not modelled 5.7 16 PDB header:lyase Chain: B: PDB Molecule:aconitate hydratase 2; PDBTitle: crystal structure of e. coli aconitase b. 82 c3q2kB_ not modelled 5.7 16 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca 83 d2qalf1 not modelled 5.7 12 Fold:Ferredoxin-like Superfamily:Ribosomal protein S6 Family:Ribosomal protein S6 84 c2qbbF_ not modelled 5.7 12 PDB header:ribosome Chain: F: PDB Molecule:30s ribosomal protein s6; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 30s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. 85 d1x9ga_ not modelled 5.6 11 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 86 c3ezyB_ not modelled 5.5 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima 87 d2b5ic2 not modelled 5.4 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 88 c3brqA_ not modelled 5.3 13 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 89 c3bleA_ not modelled 5.3 10 PDB header:transferase Chain: A: PDB Molecule:citramalate synthase from leptospira interrogans; PDBTitle: crystal structure of the catalytic domain of licms in2 complexed with malonate 90 c3ktbD_ not modelled 5.2 21 PDB header:transcription regulator Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor; PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482 91 c3c8fA_ not modelled 5.1 12 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0