PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2qbbF_

Fold library id	PDB Header	Molecule	Title
c2qbbF_	PDB header: ribosome	Chain: F: PDB Molecule: 30s ribosomal protein s6;	PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 30s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400.

Links to external resources
Added to library: Tue Mar 16 13:13:41 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M R H Y E I V F M V H P D Q S E Q V P G M I E R Y T A A I T G A E G K I H R L E D W G R R Q L A Y P I N K L H K A H Y V L M N V E A P Q E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T T
B S
S S
T T S
S
B B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100

Sequence I D E L E T T F R F N D A V I R S M V M R T K H A V T E A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	R	H	Y	E	I	V	F	M	V	H	P	D	Q	S	E	Q	V	P	G	M	I	E	R	Y	T	A	A	I	T	G	A	E	G	K	I	H	R	L	E	D	W	G	R	R	Q	L	A	Y	P	I	N	K	L	H	K	A	H	Y	V	L	M	N	V	E	A	P	Q	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G	T	T																T	T										B	S				S	S		T	T	S		S			B	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Sequence	I	D	E	L	E	T	T	F	R	F	N	D	A	V	I	R	S	M	V	M	R	T	K	H	A	V	T	E	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T		T	T										S	S				S