PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2f5tX_

Fold library id	PDB Header	Molecule	Title
c2f5tX_	PDB header: transcription	Chain: X: PDB Molecule: archaeal transcriptional regulator trmb;	PDBTitle: crystal structure of the sugar binding domain of the2 archaeal transcriptional regulator trmb

Links to external resources
Added to library: Tue Mar 16 13:32:09 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A I W R S R S F D E A I E M F R E S L Y S A K N E V I V V T P S E F F E T I R E D L I K T L E R G V T V S L Y I D K I P D L S E F K G K G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
S S
G G G T T
S S
G G G T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F F V R Q F Y K L N H L I G M T D G K E V V T I Q N A T F D S I G P P S F K S T Y P E I I F S Q Y S L I I E I F K E S T L E K E I I G N P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T T T T T T T
S S S
T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D I R F F A M F H A V D F V K N H L K N R N I Y A E I T G K N L E S G R L E T L T G R V V G Y T L S L R E A V N N I H L E T E N G V V K V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T S
T T T
G G G T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence G M F A V I E D Y E S T E I K F I M G G S R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	I	W	R	S	R	S	F	D	E	A	I	E	M	F	R	E	S	L	Y	S	A	K	N	E	V	I	V	V	T	P	S	E	F	F	E	T	I	R	E	D	L	I	K	T	L	E	R	G	V	T	V	S	L	Y	I	D	K	I	P	D	L	S	E	F	K	G	K	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S															T		S	S								G	G	G														T	T								S	S					G	G	G	T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	F	V	R	Q	F	Y	K	L	N	H	L	I	G	M	T	D	G	K	E	V	V	T	I	Q	N	A	T	F	D	S	I	G	P	P	S	F	K	S	T	Y	P	E	I	I	F	S	Q	Y	S	L	I	I	E	I	F	K	E	S	T	L	E	K	E	I	I	G	N	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S				S						T	T	T						T	T	T	T	T		S	S	S																									T									S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	I	R	F	F	A	M	F	H	A	V	D	F	V	K	N	H	L	K	N	R	N	I	Y	A	E	I	T	G	K	N	L	E	S	G	R	L	E	T	L	T	G	R	V	V	G	Y	T	L	S	L	R	E	A	V	N	N	I	H	L	E	T	E	N	G	V	V	K	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S													T	T	T	S											T	T	T																	G	G	G	T									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	G	M	F	A	V	I	E	D	Y	E	S	T	E	I	K	F	I	M	G	G	S	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S	S	S											T	T	T	T