Phyre 2 alignment of P0AA84 with c2krcA_

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Job Description | P0AA84
Confidence | 7.42% | Date | Thu Jan 5 11:12:11 GMT 2012
Rank | 65 | Aligned Residues | 26
% Identity | 8% | Template | c2krcA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; | PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 294 | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | L | M | D | D | H | W | A | T | V | G | S | S | N | L | D | P | L | S | L | S | L | N | L | E | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | N | I | D | G | R | F | L | A | L | S | D | Q | T | W | G | L | R | S | W | Y | P | Y | D | Q | L
Template Known Secondary structure |  |  |  | T |  | S | S |  |  |  | S | S | S | S |  |  |  |  | G | G | G | S | S | S | S |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 62 | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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