Phyre 2 alignment of P0AA84 with d1q32a2

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Job Description | P0AA84
Confidence | 96.35% | Date | Thu Jan 5 11:12:11 GMT 2012
Rank | 17 | Aligned Residues | 35
% Identity | 29% | Template | d1q32a2
SCOP info | Phospholipase D/nuclease | Phospholipase D/nuclease | Tyrosyl-DNA phosphodiesterase TDP1
Resolution | 2.03

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 289 | 290 | . | . | . | . | . |  |  | . | . | . |  |  |  |  |  |  |  | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . |  |  |  |  |  |  | . | . | . | . | 320 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query Sequence |  | L | H | G | K | V | A | L | . | . | M | D | D | . | . | . | . | . | . | . | H | W | A | T | V | G | S | S | N | L | D | P | L | S | L | S | L | . | . | . | . | . | . | N | L | E | A | N | V | I | I
Query Conservation |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | H | S | K | F | Y | M | H | C | A | T | N | S | Q | V | F | K | E | L | E | W | C | L | Y | T | S | A | N | L | S | Q | T | A | W | G | T | V | S | R | K | P | R | N | Y | E | A | G | V | L | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  | S |  |  |  |  |  | S |  |  | B | S |  |  |  |  |  |  | S | S | S |  |  | S | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 431 | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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