Phyre 2 alignment of P0AA84 with d1jy1a2

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Job Description | P0AA84
Confidence | 96.77% | Date | Thu Jan 5 11:12:11 GMT 2012
Rank | 15 | Aligned Residues | 39
% Identity | 23% | Template | d1jy1a2
SCOP info | Phospholipase D/nuclease | Phospholipase D/nuclease | Tyrosyl-DNA phosphodiesterase TDP1
Resolution | 1.69

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 285 | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | 320 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | R | R | R | P | L | H | G | K | V | A | L | M | D | D | H | . | . | . | . | . | . | W | A | T | V | G | S | S | N | L | D | P | L | S | L | S | . | . | . | . | . | . | . | . | . | . | . | L | N | L | E | A | N | V | I | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | N | A | X | P | H | I | K | T | Y | X | R | P | S | P | D | F | S | K | I | A | W | F | L | V | T | S | A | N | L | S | K | A | A | W | G | A | L | E | K | N | G | T | Q | L | X | I | R | S | Y | E | L | G | V | L | F
Template Known Secondary structure |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  | S |  |  | B | S |  |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 488 | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | .

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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