09/01/2012 03:05:33 : INFO  : Run start: Mon Jan  9 03:05:31 GMT 2012
09/01/2012 03:05:40 : INFO  : Initialised job
09/01/2012 03:05:42 : INFO  : Renaming log file 'phyre2_20120109_030531.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f238f6596560a176/phyre_20120109_030531.log'
09/01/2012 03:05:44 : INFO  : Initialised job:
Sequence
>batch____
MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFEDDVGKQLHAALLAAAQ
RGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLFGMRTNVFRRMHRKIVVID
ARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDILQFELENLPGQSAARRWWRRH
HKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQARREVIIANAYFFPGYRFLHAL
RKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVKGGVQVFEYRRRPLHGKVALMDDHW
ATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRDNLNGIIAADCQQVDETMLPKRTWWNL
TKSVLAFHFLRHFPALVGWLPAHTPRLAQVDPPAQPTMETQDRVETENTGVKP

09/01/2012 03:05:46 : INFO  : Checked sequence
09/01/2012 03:05:50 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 03:05:52 : INFO  : PSI-BLAST 3 iterations
09/01/2012 03:08:11 : INFO  : PSI-BLAST 5 iterations
09/01/2012 03:10:43 : INFO  : Finished PSI-BLAST
09/01/2012 03:10:46 : INFO  : Running Buildali to generate a3m file
09/01/2012 03:27:53 : INFO  : Converting to HMM
09/01/2012 03:28:03 : INFO  : Calibrating HMM
09/01/2012 03:28:19 : INFO  : Searching HMM database
09/01/2012 03:35:40 : INFO  : Finished buildali
09/01/2012 03:35:42 : INFO  : Predicting secondary structure
09/01/2012 03:35:55 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 03:35:57 : INFO  : Predicting Disordered regions
09/01/2012 03:36:03 : INFO  : Predicted Disorder (Disopred)
09/01/2012 03:36:05 : INFO  : Running memsat_svm check
09/01/2012 03:39:37 : INFO  : Globular protein
09/01/2012 03:39:39 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f238f6596560a176'
09/01/2012 03:39:41 : INFO  : Initialising fold library search
09/01/2012 03:39:46 : INFO  : Initialised search input
09/01/2012 03:39:49 : INFO  : Building Ensemble models
09/01/2012 03:39:55 : INFO  : Building hh.c3hsiC_.model.1.pdb
09/01/2012 03:40:15 : INFO  : Building hh.c1v0sA_.model.2.pdb
09/01/2012 03:40:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f238f6596560a176/hh.c1v0sA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f238f6596560a176/c1v0sA_.2.pdb
09/01/2012 03:40:37 : INFO  : Building c3hsiC_.1.pdb
09/01/2012 03:40:57 : INFO  : Building c1v0sA_.2.pdb
09/01/2012 03:41:16 : INFO  : Building c1xdoB_.3.pdb
09/01/2012 03:41:35 : INFO  : Building d1v0wa1.4.pdb
09/01/2012 03:41:50 : INFO  : Building d1xdpa3.5.pdb
09/01/2012 03:42:10 : INFO  : Building d1byra_.6.pdb
09/01/2012 03:42:29 : INFO  : Building c2o8rA_.7.pdb
09/01/2012 03:42:47 : INFO  : Building d1v0wa2.8.pdb
09/01/2012 03:43:06 : INFO  : Building d2o8ra3.9.pdb
09/01/2012 03:43:25 : INFO  : Building d1xdpa4.10.pdb
09/01/2012 03:43:46 : INFO  : Building d2o8ra4.11.pdb
09/01/2012 03:44:06 : INFO  : Building c1q32C_.12.pdb
09/01/2012 03:44:26 : INFO  : Building c3sq3C_.13.pdb
09/01/2012 03:44:46 : INFO  : Building c2c1lA_.14.pdb
09/01/2012 03:45:07 : INFO  : Building d1jy1a2.15.pdb
09/01/2012 03:45:27 : INFO  : Building c1nopB_.16.pdb
09/01/2012 03:45:47 : INFO  : Building d1q32a2.17.pdb
09/01/2012 03:46:10 : INFO  : Building d1qzqa1.18.pdb
09/01/2012 03:46:34 : INFO  : Building d1jy1a1.19.pdb
09/01/2012 03:46:53 : INFO  : Building d2f5tx2.20.pdb
09/01/2012 03:48:12 : INFO  : Finished HH model building
09/01/2012 03:48:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 03:49:36 : INFO  : html domain output complete ID 'f238f6596560a176'
09/01/2012 04:50:16 : INFO  : Run end  : Mon Jan  9 04:50:14 GMT 2012
