Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	S	L	I	Q	V	R	D	L	L	A	L	R	G	R	M	E	A	A	Q	I	S	Q	T	L	N	T	P	Q	P	M	I	N	A	M	L	Q	Q	L	E	S	M	G	K	A	V	R	I	Q	E	E	P	D	G	C	L	S	G	S
Secondary structure
SS confidence
Disorder		?	?	?										?	?	?		?									?		?	?																				?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Sequence		C	K	S	C	P	E	G	K	A	C	L	R	E	W	W	A	L	R
Secondary structure
SS confidence
Disorder		?			?	?	?										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1xn7 chain A Region: 1 - 78 Aligned: 78 Modelled: 78 Confidence: 100.0% Identity: 100% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Hypothetical protein YhgG Phyre2 PDB 2h09 chain A Region: 4 - 48 Aligned: 45 Modelled: 45 Confidence: 88.1% Identity: 24% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli Phyre2 PDB 2cg4 chain A domain 1 Region: 6 - 60 Aligned: 55 Modelled: 55 Confidence: 83.0% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Lrp/AsnC-like transcriptional regulator N-terminal domain Phyre2 PDB 1sfx chain A Region: 5 - 55 Aligned: 51 Modelled: 51 Confidence: 82.5% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: TrmB-like Phyre2 PDB 2ev0 chain A domain 1 Region: 4 - 47 Aligned: 44 Modelled: 44 Confidence: 81.4% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 2cfx chain A domain 1 Region: 6 - 49 Aligned: 44 Modelled: 44 Confidence: 80.9% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Lrp/AsnC-like transcriptional regulator N-terminal domain Phyre2 PDB 2cyy chain A domain 1 Region: 5 - 49 Aligned: 45 Modelled: 45 Confidence: 79.2% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Lrp/AsnC-like transcriptional regulator N-terminal domain Phyre2 PDB 1f5t chain A Region: 4 - 48 Aligned: 45 Modelled: 45 Confidence: 78.6% Identity: 20% PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence Phyre2 PDB 2ev5 chain B Region: 4 - 48 Aligned: 45 Modelled: 45 Confidence: 78.5% Identity: 18% PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator mntr; PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium Phyre2 PDB 3g3z chain A Region: 3 - 55 Aligned: 53 Modelled: 53 Confidence: 77.9% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis Phyre2 PDB 1ep3 chain B Region: 28 - 64 Aligned: 37 Modelled: 37 Confidence: 77.9% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. Phyre2 PDB 2cfx chain D Region: 5 - 44 Aligned: 40 Modelled: 40 Confidence: 77.5% Identity: 20% PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc Phyre2 PDB 2nyx chain B Region: 5 - 55 Aligned: 51 Modelled: 51 Confidence: 77.3% Identity: 12% PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis Phyre2 PDB 2vbz chain A Region: 5 - 44 Aligned: 40 Modelled: 40 Confidence: 77.1% Identity: 20% PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan Phyre2 PDB 2it0 chain A Region: 4 - 48 Aligned: 45 Modelled: 45 Confidence: 77.1% Identity: 20% PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii Phyre2 PDB 1g3w chain A domain 1 Region: 4 - 44 Aligned: 41 Modelled: 41 Confidence: 76.7% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 PDB 2qww chain B Region: 5 - 54 Aligned: 50 Modelled: 48 Confidence: 75.4% Identity: 16% PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution Phyre2 PDB 1s3j chain A Region: 5 - 55 Aligned: 51 Modelled: 51 Confidence: 74.6% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 1mkm chain A domain 1 Region: 5 - 48 Aligned: 44 Modelled: 44 Confidence: 74.0% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional regulator IclR, N-terminal domain Phyre2 PDB 2isy chain A domain 1 Region: 4 - 44 Aligned: 41 Modelled: 41 Confidence: 73.8% Identity: 22% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Iron-dependent repressor protein Phyre2 1 d1xn7a_ 2 c2h09A_ 3 d2cg4a1 4 d1sfxa_ 5 d2ev0a1 6 d2cfxa1 7 d2cyya1 8 c1f5tA_ 9 c2ev5B_ 10 c3g3zA_ 11 c1ep3B_ 12 c2cfxD_ 13 c2nyxB_ 14 c2vbzA_ 15 c2it0A_ 16 d1g3wa1 17 c2qwwB_ 18 d1s3ja_ 19 d1mkma1 20 d2isya1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1xn7a_ 100.0 100 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein YhgG 2 c2h09A_ 88.1 24 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli 3 d2cg4a1 83.0 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 4 d1sfxa_ 82.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 5 d2ev0a1 81.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 6 d2cfxa1 80.9 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 7 d2cyya1 79.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 8 c1f5tA_ 78.6 20 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 9 c2ev5B_ 78.5 18 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator mntr; PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium 10 c3g3zA_ 77.9 21 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 11 c1ep3B_ 77.9 19 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 12 c2cfxD_ 77.5 20 PDB header:transcription Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc; PDBTitle: structure of b.subtilis lrpc 13 c2nyxB_ 77.3 12 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 14 c2vbzA_ 77.1 20 PDB header:dna-binding protein Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan 15 c2it0A_ 77.1 20 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 16 d1g3wa1 76.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 17 c2qwwB_ 75.4 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution 18 d1s3ja_ 74.6 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 19 d1mkma1 74.0 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator IclR, N-terminal domain 20 d2isya1 73.8 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Iron-dependent repressor protein 21 d1ku9a_ not modelled 73.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:DNA-binding protein Mj223 22 c3bpxB_ not modelled 73.5 14 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 23 c3bj6B_ not modelled 73.5 20 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 24 c1g3wA_ not modelled 73.3 20 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 25 d1z05a1 not modelled 73.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 26 c2x4hA_ not modelled 72.7 13 PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus 27 c2cg4B_ not modelled 72.4 13 PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc 28 d1jgsa_ not modelled 72.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 29 c2xroE_ not modelled 71.7 15 PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; PDBTitle: crystal structure of ttgv in complex with its dna operator 30 c3nqoB_ not modelled 71.5 25 PDB header:transcription Chain: B: PDB Molecule:marr-family transcriptional regulator; PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution 31 d1i1ga1 not modelled 70.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain 32 c3e6mD_ not modelled 70.3 20 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 33 c2rdpA_ not modelled 70.0 14 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator marr; PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus 34 c3ctaA_ not modelled 69.8 15 PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase; PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum 35 c2wteB_ not modelled 69.2 9 PDB header:antiviral protein Chain: B: PDB Molecule:csa3; PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution. 36 d1z91a1 not modelled 68.9 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 37 c1fx7C_ not modelled 68.8 20 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 38 c3i4pA_ not modelled 68.7 13 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, asnc family; PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens 39 d1qzza1 not modelled 68.6 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 40 c3nrvC_ not modelled 68.6 13 PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 41 d1lnwa_ not modelled 68.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 42 d3ctaa1 not modelled 67.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 43 c3r0aB_ not modelled 67.5 15 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196) 44 d2etha1 not modelled 67.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 45 d1xd7a_ not modelled 66.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 46 c1mkmA_ not modelled 65.8 15 PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr 47 d2frha1 not modelled 64.4 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 48 c3lwfD_ not modelled 63.4 20 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution 49 c2fa5B_ not modelled 63.3 20 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator marr/emrr family; PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris 50 d2a61a1 not modelled 63.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 51 d1tw3a1 not modelled 63.2 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 52 c1xduA_ not modelled 63.1 17 PDB header:transferase Chain: A: PDB Molecule:protein rdmb; PDBTitle: crystal structure of aclacinomycin-10-hydroxylase (rdmb) in complex2 with sinefungin (sfg) 53 d2fbha1 not modelled 62.9 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 54 c3i53A_ not modelled 62.3 25 PDB header:transferase Chain: A: PDB Molecule:o-methyltransferase; PDBTitle: crystal structure of an o-methyltransferase (ncsb1) from2 neocarzinostatin biosynthesis in complex with s-adenosyl-l-3 homocysteine (sah) 55 c2dbbA_ not modelled 61.1 23 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 56 d2fbia1 not modelled 61.0 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 57 c2y75F_ not modelled 59.6 20 PDB header:transcription Chain: F: PDB Molecule:hth-type transcriptional regulator cymr; PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis 58 c2ip2B_ not modelled 59.4 11 PDB header:transferase Chain: B: PDB Molecule:probable phenazine-specific methyltransferase; PDBTitle: structure of the pyocyanin biosynthetic protein phzm 59 c3fm5D_ not modelled 58.1 20 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator; PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1 60 d2d1ha1 not modelled 57.5 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like 61 c3cdhB_ not modelled 56.8 12 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3 62 c3k0lA_ not modelled 56.8 18 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 63 c1fp2A_ not modelled 56.3 14 PDB header:transferase Chain: A: PDB Molecule:isoflavone o-methyltransferase; PDBTitle: crystal structure analysis of isoflavone o-methyltransferase 64 d1ufma_ not modelled 56.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 65 c1x1aA_ not modelled 56.1 15 PDB header:transferase Chain: A: PDB Molecule:crtf-related protein; PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine 66 c2l4aA_ not modelled 55.7 16 PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp 67 d1stza1 not modelled 55.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain 68 c3cjnA_ not modelled 55.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi 69 c3cuoB_ not modelled 54.6 9 PDB header:transcription regulator Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav; PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli 70 d1hsja1 not modelled 54.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 71 c2e1cA_ not modelled 54.0 18 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 72 d1lj9a_ not modelled 53.4 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 73 c2r3sA_ not modelled 53.3 16 PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative o-methyltransferase (npun_r0239) from2 nostoc punctiforme pcc 73102 at 2.15 a resolution 74 c3hrmA_ not modelled 53.3 14 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator sarz; PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form 75 c2pexA_ not modelled 53.0 18 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator ohrr; PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris 76 c1tw3A_ not modelled 53.0 13 PDB header:transferase Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase; PDBTitle: crystal structure of carminomycin-4-o-methyltransferase2 (dnrk) in complex with s-adenosyl-l-homocystein (sah) and3 4-methoxy-e-rhodomycin t (m-et) 77 d1z6ra1 not modelled 52.3 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 78 c2e7xA_ not modelled 52.0 15 PDB header:transcription regulator Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator; PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand 79 c3bjaA_ not modelled 51.9 14 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 80 d1p4xa2 not modelled 51.8 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 81 d3broa1 not modelled 51.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 82 d1ep3b2 not modelled 51.3 19 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Dihydroorotate dehydrogenase B, PyrK subunit 83 c2nnnB_ not modelled 49.9 18 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa 84 c1z05A_ not modelled 48.4 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 85 c2fxaB_ not modelled 47.5 10 PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis. 86 d1ub9a_ not modelled 47.5 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 87 d2bv6a1 not modelled 46.8 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 88 c1i1gA_ not modelled 46.8 18 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator lrpa; PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus 89 c1p4xA_ not modelled 46.5 13 PDB header:transcription Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue; PDBTitle: crystal structure of sars protein from staphylococcus aureus 90 d1biaa1 not modelled 46.5 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 91 c2g7uB_ not modelled 46.2 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 92 c2p6tH_ not modelled 45.7 25 PDB header:transcription Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family; PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis 93 d2hr3a1 not modelled 45.4 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 94 c3p9kD_ not modelled 45.4 23 PDB header:transferase Chain: D: PDB Molecule:caffeic acid o-methyltransferase; PDBTitle: crystal structure of perennial ryegrass lpomt1 complexed with s-2 adenosyl-l-homocysteine and coniferaldehyde 95 c2ia2D_ not modelled 44.5 11 PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 96 d1p4xa1 not modelled 44.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 97 c2dnrA_ not modelled 43.9 33 PDB header:rna binding protein Chain: A: PDB Molecule:synaptojanin-1; PDBTitle: solution structure of rna binding domain in synaptojanin 1 98 c2jnvA_ not modelled 42.4 67 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 99 c3mczB_ not modelled 41.7 10 PDB header:transferase Chain: B: PDB Molecule:o-methyltransferase; PDBTitle: the structure of an o-methyltransferase family protein from2 burkholderia thailandensis. 100 d1fp2a1 not modelled 40.4 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 101 c2piaA_ not modelled 40.1 36 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 102 c3dp7B_ not modelled 39.9 13 PDB header:transferase Chain: B: PDB Molecule:sam-dependent methyltransferase; PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482 103 c3bddD_ not modelled 39.7 16 PDB header:transcription Chain: D: PDB Molecule:regulatory protein marr; PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution 104 c2gxgA_ not modelled 39.5 28 PDB header:transcription Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator; PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7 105 c2o0yB_ not modelled 39.3 9 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp. 106 c3txmA_ not modelled 39.2 20 PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex 107 c3s2wB_ not modelled 39.1 16 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1 108 d1ulya_ not modelled 38.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Hypothetical protein PH1932 109 d1xhja_ not modelled 37.8 56 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 110 c3tgnA_ not modelled 37.4 16 PDB header:transcription Chain: A: PDB Molecule:adc operon repressor adcr; PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state 111 d1ylfa1 not modelled 34.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 112 c3gwzB_ not modelled 34.9 17 PDB header:transferase Chain: B: PDB Molecule:mmcr; PDBTitle: structure of the mitomycin 7-o-methyltransferase mmcr 113 c3lstB_ not modelled 34.5 14 PDB header:transferase Chain: B: PDB Molecule:calo1 methyltransferase; PDBTitle: crystal structure of calo1, methyltransferase in calicheamicin2 biosynthesis, sah bound form 114 c2zmeB_ not modelled 34.0 12 PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 115 c3hruA_ not modelled 33.1 14 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 116 c3majA_ not modelled 32.8 17 PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 117 c2qvoA_ not modelled 32.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_1382; PDBTitle: crystal structure of af1382 from archaeoglobus fulgidus 118 c2gqqB_ not modelled 31.7 16 PDB header:transcription Chain: B: PDB Molecule:leucine-responsive regulatory protein; PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp) 119 c3kp3B_ not modelled 31.5 9 PDB header:transcription regulator/antibiotic Chain: B: PDB Molecule:transcriptional regulator tcar; PDBTitle: staphylococcus epidermidis in complex with ampicillin 120 d1th5a1 not modelled 31.5 22 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0