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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3txmA_

Fold library idPDB HeaderMoleculeTitle
c3txmA_PDB header: hydrolase, protein bindingChain: A: PDB Molecule: 26s proteasome regulatory complex subunit p42b;PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex


Added to library: Sat Dec 17 18:00:14 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEV
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Known secondary structure (DSSP)
TTT
TTS
TS


 .........80.........90.........100.........110.........120.........130.........140
Sequence QLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTY
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Known secondary structure (DSSP) TTT
T
TSS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence HALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKA
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Known secondary structure (DSSP) TT
S


TT

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDV
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Known secondary structure (DSSP) TT
TTSTT
ST
TTTTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIV
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Known secondary structure (DSSP) TT
STS
TTSS
TTTT
 ...
Sequence FEE
Predicted secondary structure

SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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