Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP16095
DateThu Jan 5 11:35:01 GMT 2012
Unique Job IDe368a897f2be2926

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2iafa1
Top template information
Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:Serine dehydratase beta chain-like
Confidence and coverage
Confidence:100.0% Coverage: 30%
138 residues ( 30% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
353 residues ( 78%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGH
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Disorder  ???????

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   .........70.........80.........90.........100.........110.........120
Sequence  HTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGNL
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???





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   .........130.........140.........150.........160.........170.........180
Sequence  PLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVSVPYPFKSATELLAY
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?

???
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   .........190.........200.........210.........220.........230.........240
Sequence  CNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRA
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?
??























??????????????
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   .........250.........260.........270.........280.........290.........300
Sequence  SALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPAVLAYY
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   .........310.........320.........330.........340.........350.........360
Sequence  DHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGG
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   .........370.........380.........390.........400.........410.........420
Sequence  SPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTSAPRVS
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   .........430.........440.........450....
Sequence  LDKVIETMYETGKDMNAKYRETSRGGLAIKVQCD
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??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2iaf chain A domain 1

3D model

Region: 16 - 159
Aligned: 138
Modelled: 144
Confidence: 100.0%
Identity: 43%
Fold: FwdE/GAPDH domain-like
Superfamily: Serine metabolism enzymes domain
Family: Serine dehydratase beta chain-like

Phyre2

PDB 1ygy chain A

3D model

Region: 22 - 158
Aligned: 114
Modelled: 119
Confidence: 99.6%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis

Phyre2

PDB 1ygy chain A domain 4

3D model

Region: 22 - 158
Aligned: 113
Modelled: 119
Confidence: 99.3%
Identity: 18%
Fold: FwdE/GAPDH domain-like
Superfamily: Serine metabolism enzymes domain
Family: SerA intervening domain-like

Phyre2

PDB 1szq chain A

3D model

Region: 289 - 414
Aligned: 121
Modelled: 126
Confidence: 97.6%
Identity: 17%
Fold: 2-methylcitrate dehydratase PrpD
Superfamily: 2-methylcitrate dehydratase PrpD
Family: 2-methylcitrate dehydratase PrpD

Phyre2

PDB 2hp0 chain A

3D model

Region: 188 - 422
Aligned: 217
Modelled: 235
Confidence: 97.6%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:ids-epimerase;
PDBTitle: crystal structure of iminodisuccinate epimerase

Phyre2

PDB 3u4g chain A

3D model

Region: 348 - 379
Aligned: 32
Modelled: 29
Confidence: 51.7%
Identity: 38%
PDB header:transferase
Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase;
PDBTitle: the structure of cobt from pyrococcus horikoshii

Phyre2

PDB 3s1s chain A

3D model

Region: 361 - 386
Aligned: 26
Modelled: 26
Confidence: 51.3%
Identity: 31%
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:restriction endonuclease bpusi;
PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi

Phyre2

PDB 2i7n chain A domain 2

3D model

Region: 126 - 183
Aligned: 48
Modelled: 58
Confidence: 31.7%
Identity: 21%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Fumble-like

Phyre2

PDB 2rkb chain E

3D model

Region: 1 - 52
Aligned: 51
Modelled: 52
Confidence: 29.4%
Identity: 24%
PDB header:lyase
Chain: E: PDB Molecule:serine dehydratase-like;
PDBTitle: serine dehydratase like-1 from human cancer cells

Phyre2

PDB 1ryp chain A

3D model

Region: 125 - 214
Aligned: 90
Modelled: 90
Confidence: 29.3%
Identity: 11%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Proteasome subunits

Phyre2

PDB 1no5 chain A

3D model

Region: 46 - 63
Aligned: 18
Modelled: 18
Confidence: 26.0%
Identity: 22%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Catalytic subunit of bi-partite nucleotidyltransferase

Phyre2

PDB 1ug2 chain A

3D model

Region: 175 - 223
Aligned: 48
Modelled: 49
Confidence: 24.5%
Identity: 19%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Myb/SANT domain

Phyre2

PDB 1g5t chain A

3D model

Region: 394 - 443
Aligned: 50
Modelled: 50
Confidence: 24.4%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 1kny chain A

3D model

Region: 11 - 63
Aligned: 50
Modelled: 53
Confidence: 21.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase

Phyre2

PDB 2kel chain B

3D model

Region: 177 - 212
Aligned: 27
Modelled: 36
Confidence: 20.7%
Identity: 26%
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1

Phyre2

PDB 1g64 chain B

3D model

Region: 418 - 443
Aligned: 26
Modelled: 26
Confidence: 19.4%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: RecA protein-like (ATPase-domain)

Phyre2

PDB 3ugs chain B

3D model

Region: 171 - 316
Aligned: 125
Modelled: 129
Confidence: 19.2%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni

Phyre2

PDB 1yy3 chain A

3D model

Region: 282 - 288
Aligned: 7
Modelled: 7
Confidence: 17.9%
Identity: 57%
PDB header:isomerase
Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase-
PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea)

Phyre2

PDB 2zfd chain B

3D model

Region: 417 - 452
Aligned: 36
Modelled: 36
Confidence: 16.4%
Identity: 22%
PDB header:signaling protein/transferase
Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90;
PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14

Phyre2

PDB 1pwh chain A

3D model

Region: 1 - 52
Aligned: 52
Modelled: 52
Confidence: 15.4%
Identity: 13%
Fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Phyre2
1

d2iafa1
2

c1ygyA_
3

d1ygya4
4

d1szqa_
5

c2hp0A_
6

c3u4gA_
7

c3s1sA_
8

d2i7na2
9

c2rkbE_
10

d1rypa_
11

d1no5a_
12

d1ug2a_
13

d1g5ta_
14

c1knyA_
15

c2kelB_
16

d1g64b_
17

c3ugsB_
18

c1yy3A_
19

c2zfdB_
20

d1pwha_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2iafa1



100.0 43 Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:Serine dehydratase beta chain-like
2c1ygyA_



99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis
3d1ygya4



99.3 18 Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:SerA intervening domain-like
4d1szqa_



97.6 17 Fold:2-methylcitrate dehydratase PrpD
Superfamily:2-methylcitrate dehydratase PrpD
Family:2-methylcitrate dehydratase PrpD
5c2hp0A_



97.6 15 PDB header:isomerase
Chain: A: PDB Molecule:ids-epimerase;
PDBTitle: crystal structure of iminodisuccinate epimerase
6c3u4gA_



51.7 38 PDB header:transferase
Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase;
PDBTitle: the structure of cobt from pyrococcus horikoshii
7c3s1sA_



51.3 31 PDB header:hydrolase, transferase
Chain: A: PDB Molecule:restriction endonuclease bpusi;
PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi
8d2i7na2



31.7 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
9c2rkbE_



29.4 24 PDB header:lyase
Chain: E: PDB Molecule:serine dehydratase-like;
PDBTitle: serine dehydratase like-1 from human cancer cells
10d1rypa_



29.3 11 Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
11d1no5a_



26.0 22 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
12d1ug2a_



24.5 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
13d1g5ta_



24.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
14c1knyA_



21.0 26 PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase
15c2kelB_



20.7 26 PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
16d1g64b_



19.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
17c3ugsB_



19.2 20 PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni
18c1yy3A_



17.9 57 PDB header:isomerase
Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase-
PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea)
19c2zfdB_



16.4 22 PDB header:signaling protein/transferase
Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90;
PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14
20d1pwha_



15.4 13 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
21d1r85a_



not modelled 14.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
22c2k9iB_



not modelled 13.9 25 PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid prn1, complete sequence;
PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus
23c2vfwB_



not modelled 13.9 16 PDB header:transferase
Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase;
PDBTitle: rv1086 native
24d1gg2g_



not modelled 13.5 42 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
25d1ylqa1



not modelled 13.2 22 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
26d1omwg_



not modelled 12.2 42 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
27d1h72c1



not modelled 12.2 31 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
28c2cycB_



not modelled 12.0 20 PDB header:ligase
Chain: B: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii
29c1us2A_



not modelled 11.8 8 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-xylanase;
PDBTitle: xylanase10c (mutant e385a) from cellvibrio japonicus in2 complex with xylopentaose
30c3sz8D_



not modelled 11.8 10 PDB header:transferase
Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2;
PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei
31d1jb0l_



not modelled 11.8 26 Fold:Photosystem I reaction center subunit XI, PsaL
Superfamily:Photosystem I reaction center subunit XI, PsaL
Family:Photosystem I reaction center subunit XI, PsaL
32c2rffA_



not modelled 11.8 21 PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase2 (np_343093.1) from sulfolobus solfataricus at 1.40 a3 resolution
33c1u9pA_



not modelled 11.2 13 PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
34d1j20a1



not modelled 11.1 24 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
35c1k97A_



not modelled 11.0 10 PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline
36d1gotg_



not modelled 10.9 25 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
37c2ddhA_



not modelled 10.7 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
38d1xhmb1



not modelled 10.6 45 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
39d1fh9a_



not modelled 10.5 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
40c1xhmB_



not modelled 10.5 45 PDB header:signaling protein
Chain: B: PDB Molecule:guanine nucleotide-binding protein g(i)/g(s)
PDBTitle: the crystal structure of a biologically active peptide2 (sigk) bound to a g protein beta:gamma heterodimer
41d1knya2



not modelled 10.3 26 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
42d1tbge_



not modelled 10.2 25 Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
43c2fonA_



not modelled 10.1 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:peroxisomal acyl-coa oxidase 1a;
PDBTitle: x-ray crystal structure of leacx1, an acyl-coa oxidase from2 lycopersicon esculentum (tomato)
44c3lr6A_



not modelled 10.0 30 PDB header:structural protein
Chain: A: PDB Molecule:major ampullate spidroin 1;
PDBTitle: self-assembly of spider silk proteins is controlled by a ph-sensitive2 relay
45c2dlcX_



not modelled 10.0 18 PDB header:ligase/trna
Chain: X: PDB Molecule:tyrosyl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of the ternary complex of yeast tyrosyl-trna2 synthetase
46d1ncfb3



not modelled 9.9 40 Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
47d1b65a_



not modelled 9.8 20 Fold:DmpA/ArgJ-like
Superfamily:DmpA/ArgJ-like
Family:DmpA-like
48d1ng7a_



not modelled 9.7 36 Fold:Soluble domain of poliovirus core protein 3a
Superfamily:Soluble domain of poliovirus core protein 3a
Family:Soluble domain of poliovirus core protein 3a
49d1k61a_



not modelled 9.6 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
50d1ee8a1



not modelled 9.2 14 Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
51c1kh2D_



not modelled 9.1 25 PDB header:ligase
Chain: D: PDB Molecule:argininosuccinate synthetase;
PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp
52c3bh1A_



not modelled 9.1 28 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
53c2crnA_



not modelled 9.0 16 PDB header:immune system
Chain: A: PDB Molecule:ubash3a protein;
PDBTitle: solution structure of the uba domain of human ubash3a2 protein
54c2k3qA_



not modelled 9.0 22 PDB header:structural protein
Chain: A: PDB Molecule:tusp1;
PDBTitle: solution structure of the n-terminal domain (tusp1-n) of the2 egg case silk from nephila antipodiana
55d1nlna_



not modelled 8.8 19 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
56d1tuxa_



not modelled 8.6 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
57d1fi6a_



not modelled 8.3 20 Fold:EF Hand-like
Superfamily:EF-hand
Family:Eps15 homology domain (EH domain)
58c1iszA_



not modelled 8.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-d-xylanase;
PDBTitle: crystal structure of xylanase from streptomyces2 olivaceoviridis e-86 complexed with galactose
59d1wota_



not modelled 8.0 29 Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
60c2f5xC_



not modelled 8.0 27 PDB header:transport protein
Chain: C: PDB Molecule:bugd;
PDBTitle: structure of periplasmic binding protein bugd
61d2nrha1



not modelled 7.9 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like
62c2x3dC_



not modelled 7.8 16 PDB header:unknown function
Chain: C: PDB Molecule:sso6206;
PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2
63d2raqa1



not modelled 7.7 11 Fold:Ferredoxin-like
Superfamily:MTH889-like
Family:MTH889-like
64d1bg4a_



not modelled 7.7 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
65d1k92a1



not modelled 7.7 11 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
66d1p5ja_



not modelled 7.7 13 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
67c1p5jA_



not modelled 7.7 13 PDB header:lyase
Chain: A: PDB Molecule:l-serine dehydratase;
PDBTitle: crystal structure analysis of human serine dehydratase
68c2fglA_



not modelled 7.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:alkaline thermostable endoxylanase;
PDBTitle: an alkali thermostable f/10 xylanase from alkalophilic2 bacillus sp. ng-27
69d1j6ua3



not modelled 7.6 29 Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
70d1wkva1



not modelled 7.5 18 Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
71d1k47a1



not modelled 7.4 25 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
72d1x2na1



not modelled 7.3 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
73d2gkea2



not modelled 7.3 23 Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:Diaminopimelate epimerase
74c2xa0A_



not modelled 7.3 29 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
75d2ar0a1



not modelled 7.2 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N-6 DNA Methylase-like
76d1j09a1



not modelled 7.2 25 Fold:An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Superfamily:An anticodon-binding domain of class I aminoacyl-tRNA synthetases
Family:C-terminal domain of glutamyl-tRNA synthetase (GluRS)
77d1vl2a1



not modelled 7.1 31 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
78c1w07A_



not modelled 7.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: arabidopsis thaliana acyl-coa oxidase 1
79c3g2bA_



not modelled 7.0 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
80d1vlfm2



not modelled 6.9 16 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
81d1exta3



not modelled 6.9 40 Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
82d2r5yb1



not modelled 6.9 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
83c2jyaA_



not modelled 6.9 25 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1810;
PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776
84c3ibqA_



not modelled 6.7 24 PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp
85d1uf2a_



not modelled 6.7 36 Fold:Reovirus inner layer core protein p3
Superfamily:Reovirus inner layer core protein p3
Family:Phytoreovirus core
86c1uf2A_



not modelled 6.7 36 PDB header:virus
Chain: A: PDB Molecule:core protein p3;
PDBTitle: the atomic structure of rice dwarf virus (rdv)
87d1yrnb_



not modelled 6.7 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
88c2fkkA_



not modelled 6.6 25 PDB header:viral protein
Chain: A: PDB Molecule:baseplate structural protein gp10;
PDBTitle: crystal structure of the c-terminal domain of the bacteriophage t42 gene product 10
89c2j5bA_



not modelled 6.5 15 PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of the tyrosyl trna synthetase from acanthamoeba2 polyphaga mimivirus complexed with tyrosynol
90c1qoyA_



not modelled 6.5 12 PDB header:toxin
Chain: A: PDB Molecule:hemolysin e;
PDBTitle: e.coli hemolysin e (hlye, clya, shea)
91c1pprO_



not modelled 6.5 11 PDB header:light-harvesting protein
Chain: O: PDB Molecule:peridinin-chlorophyll protein;
PDBTitle: peridinin-chlorophyll-protein of amphidinium carterae
92c2jugB_



not modelled 6.5 39 PDB header:biosynthetic protein
Chain: B: PDB Molecule:tubc protein;
PDBTitle: multienzyme docking in hybrid megasynthetases
93d1us3a2



not modelled 6.4 8 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
94c2gefA_



not modelled 6.4 50 PDB header:hydrolase
Chain: A: PDB Molecule:protease vp4;
PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism
95d1p3da3



not modelled 6.4 26 Fold:Ribokinase-like
Superfamily:MurD-like peptide ligases, catalytic domain
Family:MurCDEF
96c3l0zC_



not modelled 6.4 19 PDB header:transferase
Chain: C: PDB Molecule:putative nicotinate-nucleotide-dimethylbenzimidazole
PDBTitle: crystal structure of a putative nicotinate-nucleotide-2 dimethylbenzimidazole phosphoribosyltransferase from3 methanocaldococcus jannaschii dsm 2661
97c2ci8A_



not modelled 6.3 9 PDB header:translation
Chain: A: PDB Molecule:cytoplasmic protein nck1;
PDBTitle: sh2 domain of human nck1 adaptor protein - uncomplexed
98c3khkA_



not modelled 6.3 23 PDB header:dna binding protein
Chain: A: PDB Molecule:type i restriction-modification system
PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei.
99c2dagA_



not modelled 6.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0