PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2vfwB_

Fold library id	PDB Header	Molecule	Title
c2vfwB_	PDB header: transferase	Chain: B: PDB Molecule: short-chain z-isoprenyl diphosphate synthetase;	PDBTitle: rv1086 native

Links to external resources
Added to library: Tue Mar 16 13:14:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D L P R H I A V L C D G N R R W A R S A G Y D D V S Y G Y R M G A A K I A E M L R W C H E A G I E L A T V Y L L S T E N L Q R D P D E L A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T T
S
B T T G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L I E I I T D V V E E I C A P A N H W S V R T V G D L G L I G E E P A R R L R G A V E S T P E V A S F H V N V A V G Y G G R R E I V D A V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T
S
G G G S
T S
S S
S
S B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L L S K E L A N G A T A E E L V D A V T V E G I S E N L Y T S G Q P D P D L V I R T S G E Q R L S G F L L W Q S A Y S E M W F T E A H W P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
T S T T T T S
S
T T
T T T T T T T T T T
S S
G G

. . . . . . . . . 220 . . . . . . .

Sequence A F R H V D F L R A L R D Y S A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	L	P	R	H	I	A	V	L	C	D	G	N	R	R	W	A	R	S	A	G	Y	D	D	V	S	Y	G	Y	R	M	G	A	A	K	I	A	E	M	L	R	W	C	H	E	A	G	I	E	L	A	T	V	Y	L	L	S	T	E	N	L	Q	R	D	P	D	E	L	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																T	T		S		T																						T		S								B	T	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	I	E	I	I	T	D	V	V	E	E	I	C	A	P	A	N	H	W	S	V	R	T	V	G	D	L	G	L	I	G	E	E	P	A	R	R	L	R	G	A	V	E	S	T	P	E	V	A	S	F	H	V	N	V	A	V	G	Y	G	G	R	R	E	I	V	D	A	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T		T	T	T								S		G	G	G	S														T	S		S	S		S								S	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	L	S	K	E	L	A	N	G	A	T	A	E	E	L	V	D	A	V	T	V	E	G	I	S	E	N	L	Y	T	S	G	Q	P	D	P	D	L	V	I	R	T	S	G	E	Q	R	L	S	G	F	L	L	W	Q	S	A	Y	S	E	M	W	F	T	E	A	H	W	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T							T	T	T									T	S	T	T	T	T	S				S						T	T					T	T	T	T	T	T	T	T	T	T							S	S		G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	A	F	R	H	V	D	F	L	R	A	L	R	D	Y	S	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G															T